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Series GSE135941 Query DataSets for GSE135941
Status Public on May 23, 2020
Title Genome-wide chromatin structure alteration during Epstein-Barr virus infection (Hi-C)
Organism Homo sapiens
Experiment type Other
Summary We analysed chromatin structure alterations by EBV infection to elucidate their contribution to tumorigenesis. We performed Hi-C using gastric epithelial cells with or without EBV infection.
 
Overall design Hi-C experiments in 14 Gastric cancer cell lines, 2 normal gastric epithelial cells, a primary EBV(+) gastric cancer tissue, and EBV infected or uninfected gastric cancer cells.
 
Contributor(s) Okabe A, Fukuyo M, Kaneda A
Citation(s) 32719515
Submission date Aug 18, 2019
Last update date Aug 23, 2020
Contact name Masaki Fukuyo
E-mail(s) fukuyo@chiba-u.jp
Organization name Chiba University
Department Department of Molecular Oncology
Street address 1-8-1 Inohana, Chuo-ku
City Chiba
ZIP/Postal code 260-8670
Country Japan
 
Platforms (3)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
GPL18460 Illumina HiSeq 1500 (Homo sapiens)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (21)
GSM4038114 HiC_GES-1
GSM4038115 HiC_HFE145
GSM4038116 HiC_IM95
This SubSeries is part of SuperSeries:
GSE135176 Genome-wide analysis of histone modification alteration in EBV(+) GC cell lines
Relations
BioProject PRJNA560694
SRA SRP218691

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE135941_RAW.tar 110.7 Gb (http)(custom) TAR (of HIC)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file

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