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Series GSE135830 Query DataSets for GSE135830
Status Public on Aug 15, 2019
Title Maternal obesity alters neurotrophin-associated MAPK ignaling in the hypothalamus of male mouse offspring
Organism Mus musculus
Experiment type Expression profiling by array
Summary In the present project we examined the effects of maternal obesity to offspring hypothalamic tissue at postnatal day (P) 21. Maternal obesity has emerged as an important risk factor for the development of metabolic disorders in the offspring.To obtain an overview of affected genes in the offsprings hypothalamus, the center of hunger and satiety in the brain, we performed whole genome microarray expression profiling. Female mice were fed either a control diet (SD) or a high fat diet (HFD) after weaning until mating and during pregnancy and gestation. On P21, male pups were sacrificed and blood samples were collected for further analyses. The hypothalamus was cut immediately caudal to the optic chiasm. The dissection was limited laterally by the hypothalamic sulci and dorsally by the mammillothalamic tract. Hypothalamic tissue was immediately frozen at −80° C. A maximum of two offspring per dam were analysed to minimize litter-dependent bias. All studies were performed using male offspring.
 
Overall design Microarray experiments of mice hypothalamic RNA were performed as single-color experiments using 4_44K Mouse (v2) Whole Genome Arrays from Agilent Technologies (Santa Clara, CA). First, differentially expressed genes between the CO group and HFD group, were identified using the Rank Product test. Genes were called significant with a percentage false positive below 0.001. All statistical calculations were performed using R version 3.1.2 and Bioconductor. Functional Annotation Clustering was performed by DAVID Bioinformatics Resources (http://david 6.7.abcc.ncifcrf.gov/home.jsp).
 
Contributor(s) Hucklenbruch-Rother E, Oberthuer A, Bae-Gartz I
Citation(s) 31572115
Submission date Aug 14, 2019
Last update date Oct 07, 2019
Contact name Eva Hucklenbruch-Rother
E-mail(s) eva.hucklenbruch-rother@uk-koeln.de
Organization name University Hospital of Cologne
Department Department of Pediatric and Adolescent Medicine
Lab Metabolism and perinatal programming
Street address Robert Straße 14, Gebäude 44a
City Cologne
State/province North rhine Westphalia
ZIP/Postal code 50937
Country Germany
 
Platforms (1)
GPL10333 Agilent-026655 Whole Mouse Genome Microarray 4x44K v2 (Feature Number version)
Samples (11)
GSM4034909 SD1: 65-1
GSM4034910 SD2: 65-3
GSM4034911 SD3: 65-5
Relations
BioProject PRJNA560221

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE135830_Normalized_signal_intensity.xlsx 5.0 Mb (ftp)(http) XLSX
GSE135830_RAW.tar 30.3 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table
Processed data are available on Series record

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