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GEO accession:
Series GSE135751
Query DataSets for GSE135751
Status
Public on Feb 03, 2021
Title
Epigenetic inactivation of the autophagy-lysosomal system in the Parkinson’s disease appendix
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
33406628
,
34446734
Submission date
Aug 12, 2019
Last update date
Sep 29, 2021
Contact name
Peipei Li
E-mail(s)
Lipeipei0611@gmail.com
Phone
6162345547
Organization name
Van Andel Research Institute
Department
Center for Neurodegenerative Science
Lab
Labrie lab
Street address
333 Bostwick Ave N.E.
City
Grand Rapids
State/province
MI
ZIP/Postal code
49503
Country
USA
Platforms (3)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
Samples (366)
Less...
More...
GSM4027083
1_PD_Appendix: A1
GSM4027084
1_PD_Appendix: A2
GSM4027085
1_PD_Appendix: A3
GSM4027086
1_PD_Appendix: A4
GSM4027087
1_PD_Appendix: A5
GSM4027088
1_PD_Appendix: A6
GSM4027089
1_PD_Appendix: A7
GSM4027090
1_PD_Appendix: A8
GSM4027091
1_PD_Appendix: A9
GSM4027092
1_PD_Appendix: A10
GSM4027093
1_PD_Appendix: A11
GSM4027094
1_PD_Appendix: A12
GSM4027095
1_PD_Appendix: B2
GSM4027096
1_PD_Appendix: B3
GSM4027097
1_PD_Appendix: B4
GSM4027098
1_PD_Appendix: B5
GSM4027099
1_PD_Appendix: B6
GSM4027100
1_PD_Appendix: B7
GSM4027101
1_PD_Appendix: B8
GSM4027102
1_PD_Appendix: B9
GSM4027103
1_PD_Appendix: B10
GSM4027104
1_PD_Appendix: B11
GSM4027105
1_PD_Appendix: B12
GSM4027106
1_PD_Appendix: C1
GSM4027107
1_PD_Appendix: C2
GSM4027108
1_PD_Appendix: C3
GSM4027109
1_PD_Appendix: C4
GSM4027110
1_PD_Appendix: C5
GSM4027111
1_PD_Appendix: C6
GSM4027112
1_PD_Appendix: C7
GSM4027113
1_PD_Appendix: C8
GSM4027114
1_PD_Appendix: C9
GSM4027115
1_PD_Appendix: C10
GSM4027116
1_PD_Appendix: C11
GSM4027117
1_PD_Appendix: C12
GSM4027118
1_PD_Appendix: D1
GSM4027119
1_PD_Appendix: D2
GSM4027120
1_PD_Appendix: D3
GSM4027121
1_PD_Appendix: D4
GSM4027122
1_PD_Appendix: D5
GSM4027123
1_PD_Appendix: D6
GSM4027124
1_PD_Appendix: D7
GSM4027125
1_PD_Appendix: D8
GSM4027126
1_PD_Appendix: D9
GSM4027127
1_PD_Appendix: D10
GSM4027128
1_PD_Appendix: D11
GSM4027129
1_PD_Appendix: D12
GSM4027130
1_PD_Appendix: E2
GSM4027131
1_PD_Appendix: E3
GSM4027132
1_PD_Appendix: E4
GSM4027133
1_PD_Appendix: E5
GSM4027134
1_PD_Appendix: E6
GSM4027135
1_PD_Appendix: E7
GSM4027136
1_PD_Appendix: E8
GSM4027137
1_PD_Appendix: E9
GSM4027138
1_PD_Appendix: E10
GSM4027139
1_PD_Appendix: E11
GSM4027140
1_PD_Appendix: E12
GSM4027141
1_PD_Appendix: F1
GSM4027142
1_PD_Appendix: F2
GSM4027143
1_PD_Appendix: F3
GSM4027144
1_PD_Appendix: F4
GSM4027145
1_PD_Appendix: F5
GSM4027146
1_PD_Appendix: F6
GSM4027147
1_PD_Appendix: F7
GSM4027148
1_PD_Appendix: F9
GSM4027149
1_PD_Appendix: F10
GSM4027150
1_PD_Appendix: F11
GSM4027151
1_PD_Appendix: F12
GSM4027152
1_PD_Appendix: G1
GSM4027153
1_PD_Appendix: G2
GSM4027154
1_PD_Appendix: G3
GSM4027155
1_PD_Appendix: G4
GSM4027156
1_PD_Appendix: G5
GSM4027157
1_PD_Appendix: G6
GSM4027158
1_PD_Appendix: G7
GSM4027159
1_PD_Appendix: G8
GSM4027160
1_PD_Appendix: G9
GSM4027161
1_PD_Appendix: 3544
GSM4027162
1_PD_Appendix: 3599
GSM4027163
1_PD_Appendix: 3604
GSM4027164
1_PD_Appendix: 3610
GSM4027166
1_PD_Appendix: 3623
GSM4027167
1_PD_Appendix: 3625
GSM4027168
1_PD_Appendix: 3628
GSM4027169
1_PD_Appendix: 3645
GSM4027170
1_PD_Appendix: 3649
GSM4027171
1_PD_Appendix: 3656
GSM4027172
1_PD_Appendix: 3649-R1
GSM4027173
1_PD_Appendix: 3649-R2
GSM4027174
2_PD_RNASeq: 3360
GSM4027175
2_PD_RNASeq: 3361
GSM4027176
2_PD_RNASeq: 3362
GSM4027177
2_PD_RNASeq: 3363
GSM4027178
2_PD_RNASeq: 3366
GSM4027179
2_PD_RNASeq: 3369
GSM4027180
2_PD_RNASeq: 3370
GSM4027181
2_PD_RNASeq: 3371
GSM4027182
2_PD_RNASeq: 3374
GSM4027183
2_PD_RNASeq: 3389
GSM4027184
2_PD_RNASeq: 3441
GSM4027185
2_PD_RNASeq: 3446
GSM4027186
2_PD_RNASeq: 3452
GSM4027187
2_PD_RNASeq: 3453
GSM4027188
2_PD_RNASeq: 3454
GSM4027189
2_PD_RNASeq: 3455
GSM4027190
2_PD_RNASeq: 3461
GSM4027191
2_PD_RNASeq: 3469
GSM4027192
2_PD_RNASeq: 3508
GSM4027193
2_PD_RNASeq: 3511
GSM4027194
2_PD_RNASeq: 3512
GSM4027195
2_PD_RNASeq: 3518
GSM4027196
2_PD_RNASeq: 3525
GSM4027197
2_PD_RNASeq: 3547
GSM4027198
2_PD_RNASeq: 3548
GSM4027199
2_PD_RNASeq: 3551
GSM4027200
2_PD_RNASeq: 3554
GSM4027201
2_PD_RNASeq: 3557
GSM4027202
2_PD_RNASeq: 6755
GSM4027203
2_PD_RNASeq: 9387
GSM4027204
2_PD_RNASeq: 15515
GSM4027205
2_PD_RNASeq: 16475
GSM4027206
2_PD_RNASeq: 16490
GSM4027207
2_PD_RNASeq: 16577
GSM4027208
2_PD_RNASeq: 16629
GSM4027209
2_PD_RNASeq: 16666
GSM4027210
2_PD_RNASeq: 16697
GSM4027211
2_PD_RNASeq: 16741
GSM4027212
2_PD_RNASeq: 16814
GSM4027213
2_PD_RNASeq: 17029
GSM4027214
2_PD_RNASeq: 17047
GSM4027215
2_PD_RNASeq: 17048
GSM4027216
2_PD_RNASeq: 17265
GSM4027217
2_PD_RNASeq: 17277
GSM4027218
2_PD_RNASeq: 17331
GSM4027219
2_PD_RNASeq: 17411
GSM4027220
2_PD_RNASeq: 17710
GSM4027221
2_PD_RNASeq: 17720
GSM4027222
2_PD_RNASeq: 17832
GSM4027223
2_PD_RNASeq: 17849
GSM4027224
2_PD_RNASeq: 17903
GSM4027225
2_PD_RNASeq: 17949
GSM4027226
2_PD_RNASeq: 17973
GSM4027227
2_PD_RNASeq: 17978
GSM4027228
2_PD_RNASeq: 18381
GSM4027229
2_PD_RNASeq: 32388
GSM4027230
2_PD_RNASeq: 32422
GSM4027231
2_PD_RNASeq: 171010
GSM4027232
2_PD_RNASeq: 171099
GSM4027233
3_Mics_DSS: A1
GSM4027234
3_Mics_DSS: A2
GSM4027235
3_Mics_DSS: A3
GSM4027236
3_Mics_DSS: A4
GSM4027237
3_Mics_DSS: A5
GSM4027238
3_Mics_DSS: A6
GSM4027239
3_Mics_DSS: A7
GSM4027240
3_Mics_DSS: A8
GSM4027241
3_Mics_DSS: A9
GSM4027242
3_Mics_DSS: A10
GSM4027243
3_Mics_DSS: A11
GSM4027244
3_Mics_DSS: A12
GSM4027245
3_Mics_DSS: B1
GSM4027246
3_Mics_DSS: B2
GSM4027247
3_Mics_DSS: B3
GSM4027248
3_Mics_DSS: B4
GSM4027249
3_Mics_DSS: B5
GSM4027250
3_Mics_DSS: B6
GSM4027251
3_Mics_DSS: B7
GSM4027252
3_Mics_DSS: B8
GSM4027253
3_Mics_DSS: B9
GSM4027254
3_Mics_DSS: B10
GSM4027255
3_Mics_DSS: B11
GSM4027256
3_Mics_DSS: B12
GSM4027257
3_Mics_DSS: C1
GSM4027258
3_Mics_DSS: C2
GSM4027259
3_Mics_DSS: C3
GSM4027260
3_Mics_DSS: C4
GSM4027261
3_Mics_DSS: C5
GSM4027262
3_Mics_DSS: C6
GSM4027263
3_Mics_DSS: C7
GSM4027264
3_Mics_DSS: C8
GSM4027265
3_Mics_DSS: C9
GSM4027266
3_Mics_DSS: C10
GSM4027267
3_Mics_DSS: C11
GSM4027268
3_Mics_DSS: C12
GSM4027269
3_Mics_DSS: D1
GSM4027270
3_Mics_DSS: D2
GSM4027271
3_Mics_DSS: D3
GSM4027272
3_Mics_DSS: D4
GSM4027273
3_Mics_DSS: E5
GSM4027274
3_Mics_DSS: E6
GSM4027275
3_Mics_DSS: E7
GSM4027276
3_Mics_DSS: E8
GSM4027277
3_Mics_DSS: E9
GSM4027278
4_Mice_rAAV a-syn: D5
GSM4027279
4_Mice_rAAV a-syn: D6
GSM4027280
4_Mice_rAAV a-syn: D7
GSM4027281
4_Mice_rAAV a-syn: D8
GSM4027282
4_Mice_rAAV a-syn: D9
GSM4027283
4_Mice_rAAV a-syn: D10
GSM4027284
4_Mice_rAAV a-syn: D11
GSM4027285
4_Mice_rAAV a-syn: D12
GSM4027286
4_Mice_rAAV a-syn: E1
GSM4027287
4_Mice_rAAV a-syn: E2
GSM4027288
4_Mice_rAAV a-syn: E3
GSM4027289
4_Mice_rAAV a-syn: E4
GSM4027290
5_OFB: OB_A1_Con3551
GSM4027291
5_OFB: OB_A10_Con3452
GSM4027292
5_OFB: OB_A11_PD3461
GSM4027293
5_OFB: OB_A12_Con3446
GSM4027294
5_OFB: OB_A13_PD3441
GSM4027295
5_OFB: OB_A14_PD3518
GSM4027296
5_OFB: OB_A15_PD3554
GSM4027297
5_OFB: OB_A21_Con3547
GSM4027298
5_OFB: OB_A22_PD3440
GSM4027299
5_OFB: OB_A23_Con3455
GSM4027300
5_OFB: OB_A24_Con3511
GSM4027301
5_OFB: OB_A25_Con3454
GSM4027302
5_OFB: OB_A26_PD3459
GSM4027303
5_OFB: OB_A27_Con3453
GSM4027304
5_OFB: OB_A28_PD3531
GSM4027305
5_OFB: OB_A29_PD3508
GSM4027306
5_OFB: OB_A3_Con3363
GSM4027307
5_OFB: OB_A4_Con3512
GSM4027308
5_OFB: OB_A5_Con3557
GSM4027309
5_OFB: OB_A6_PD3525
GSM4027310
5_OFB: OB_A7_Con3460
GSM4027311
5_OFB: OB_A8_Con3469
GSM4027312
5_OFB: OB_A9_Con3548
GSM4027313
5_OFB: ROB_A12_Con3446
GSM4027314
5_OFB: ROB_A25_Con3454
GSM4027315
5_OFB: ROB_A4_Con3512
GSM4027316
6_PFC_neuron replication cohort: PFC_1_CON3455
GSM4027317
6_PFC_neuron replication cohort: PFC_10_CON3453
GSM4027318
6_PFC_neuron replication cohort: PFC_11_PD3461
GSM4027319
6_PFC_neuron replication cohort: PFC_12_CON3469
GSM4027320
6_PFC_neuron replication cohort: PFC_13_CON3452
GSM4027321
6_PFC_neuron replication cohort: PFC_15_PD3441
GSM4027322
6_PFC_neuron replication cohort: PFC_16_CON3362
GSM4027323
6_PFC_neuron replication cohort: PFC_17_CON3548
GSM4027324
6_PFC_neuron replication cohort: PFC_18_CON3361
GSM4027325
6_PFC_neuron replication cohort: PFC_19_PD3360
GSM4027326
6_PFC_neuron replication cohort: PFC_2_PD_3531
GSM4027327
6_PFC_neuron replication cohort: PFC_20_PD3561
GSM4027328
6_PFC_neuron replication cohort: PFC_21_CON3460
GSM4027329
6_PFC_neuron replication cohort: PFC_24_PD3440
GSM4027330
6_PFC_neuron replication cohort: PFC_25_PD3370
GSM4027331
6_PFC_neuron replication cohort: PFC_26_PD3369
GSM4027332
6_PFC_neuron replication cohort: PFC_27_CON3454
GSM4027333
6_PFC_neuron replication cohort: PFC_29_CON3557
GSM4027334
6_PFC_neuron replication cohort: PFC_3_CON3511
GSM4027335
6_PFC_neuron replication cohort: PFC_30_PD3525
GSM4027336
6_PFC_neuron replication cohort: PFC_31_PD3374
GSM4027337
6_PFC_neuron replication cohort: PFC_32_CON3446
GSM4027338
6_PFC_neuron replication cohort: PFC_4_PD3389
GSM4027339
6_PFC_neuron replication cohort: PFC_5_PD3459
GSM4027340
6_PFC_neuron replication cohort: PFC_6_PD3518
GSM4027341
6_PFC_neuron replication cohort: PFC_7_CON3547
GSM4027342
6_PFC_neuron replication cohort: PFC_8_CON3512
GSM4027343
6_PFC_neuron replication cohort: PFC_9_CON3363
GSM4027344
7_PFC_neuron primary cohort: A1
GSM4027345
7_PFC_neuron primary cohort: A3
GSM4027346
7_PFC_neuron primary cohort: A4
GSM4027347
7_PFC_neuron primary cohort: A5
GSM4027348
7_PFC_neuron primary cohort: A6
GSM4027349
7_PFC_neuron primary cohort: A7
GSM4027350
7_PFC_neuron primary cohort: A9
GSM4027351
7_PFC_neuron primary cohort: A10
GSM4027352
7_PFC_neuron primary cohort: A11
GSM4027353
7_PFC_neuron primary cohort: A12
GSM4027354
7_PFC_neuron primary cohort: B1
GSM4027355
7_PFC_neuron primary cohort: B2
GSM4027356
7_PFC_neuron primary cohort: B3
GSM4027357
7_PFC_neuron primary cohort: B4
GSM4027358
7_PFC_neuron primary cohort: B5
GSM4027359
7_PFC_neuron primary cohort: B6
GSM4027360
7_PFC_neuron primary cohort: B7
GSM4027361
7_PFC_neuron primary cohort: B8
GSM4027362
7_PFC_neuron primary cohort: B9
GSM4027363
7_PFC_neuron primary cohort: B10
GSM4027364
7_PFC_neuron primary cohort: B11
GSM4027365
7_PFC_neuron primary cohort: B12
GSM4027366
7_PFC_neuron primary cohort: C2
GSM4027367
7_PFC_neuron primary cohort: C3
GSM4027368
7_PFC_neuron primary cohort: C4
GSM4027369
7_PFC_neuron primary cohort: C6
GSM4027370
7_PFC_neuron primary cohort: C7
GSM4027371
7_PFC_neuron primary cohort: C8
GSM4027372
7_PFC_neuron primary cohort: C9
GSM4027373
7_PFC_neuron primary cohort: C10
GSM4027374
7_PFC_neuron primary cohort: C11
GSM4027375
7_PFC_neuron primary cohort: C12
GSM4027376
7_PFC_neuron primary cohort: D1
GSM4027377
7_PFC_neuron primary cohort: D2
GSM4027378
7_PFC_neuron primary cohort: D3
GSM4027379
7_PFC_neuron primary cohort: D4
GSM4027380
7_PFC_neuron primary cohort: D5
GSM4027381
7_PFC_neuron primary cohort: D6
GSM4027382
7_PFC_neuron primary cohort: D7
GSM4027383
7_PFC_neuron primary cohort: D8
GSM4027384
7_PFC_neuron primary cohort: D9
GSM4027385
7_PFC_neuron primary cohort: D11
GSM4027386
7_PFC_neuron primary cohort: D12
GSM4027387
7_PFC_neuron primary cohort: E1
GSM4027388
7_PFC_neuron primary cohort: E2
GSM4027389
7_PFC_neuron primary cohort: E3
GSM4027390
7_PFC_neuron primary cohort: E4
GSM4027391
7_PFC_neuron primary cohort: E6
GSM4027392
7_PFC_neuron primary cohort: E7
GSM4027393
7_PFC_neuron primary cohort: E8
GSM4027394
7_PFC_neuron primary cohort: E10
GSM4027395
7_PFC_neuron primary cohort: E11
GSM4027396
7_PFC_neuron primary cohort: E12
GSM4027397
7_PFC_neuron primary cohort: F1
GSM4027398
7_PFC_neuron primary cohort: F2
GSM4027399
7_PFC_neuron primary cohort: F3
GSM4027400
7_PFC_neuron primary cohort: F4
GSM4027401
7_PFC_neuron primary cohort: F5
GSM4027402
7_PFC_neuron primary cohort: F6
GSM4027403
7_PFC_neuron primary cohort: F7
GSM4027404
7_PFC_neuron primary cohort: F8
GSM4027405
7_PFC_neuron primary cohort: F9
GSM4027406
7_PFC_neuron primary cohort: F10
GSM4027407
7_PFC_neuron primary cohort: F11
GSM4027408
7_PFC_neuron primary cohort: F12
GSM4027409
7_PFC_neuron primary cohort: G1
GSM4027410
7_PFC_neuron primary cohort: G2
GSM4027411
7_PFC_neuron primary cohort: G3
GSM4027412
7_PFC_neuron primary cohort: G4
GSM4027413
7_PFC_neuron primary cohort: G5
GSM4027414
7_PFC_neuron primary cohort: G6
GSM4027415
7_PFC_neuron primary cohort: G7
GSM4027416
7_PFC_neuron primary cohort: G8
GSM4027417
7_PFC_neuron primary cohort: G9
GSM4027418
7_PFC_neuron primary cohort: G10
GSM4027419
7_PFC_neuron primary cohort: G11
GSM4027420
7_PFC_neuron primary cohort: G12
GSM4027421
7_PFC_neuron primary cohort: H1
GSM4027422
7_PFC_neuron primary cohort: H2
GSM4027423
7_PFC_neuron primary cohort: H3
GSM4027424
7_PFC_neuron primary cohort: H4
GSM4027425
7_PFC_neuron primary cohort: H5
GSM4027426
7_PFC_neuron primary cohort: H6
GSM4027427
7_PFC_neuron primary cohort: H8
GSM4027428
7_PFC_neuron primary cohort: H9
GSM4027429
7_PFC_neuron primary cohort: H10
GSM4027430
7_PFC_neuron primary cohort: H12
GSM4027431
7_PFC_neuron primary cohort: P2A1
GSM4027432
7_PFC_neuron primary cohort: P2A2
GSM4027433
7_PFC_neuron primary cohort: P2A3
GSM4027434
7_PFC_neuron primary cohort: P2A4
GSM4027435
7_PFC_neuron primary cohort: P2A5
GSM4027436
7_PFC_neuron primary cohort: P2A6
GSM4027438
7_PFC_neuron primary cohort: P2A7
GSM4027440
7_PFC_neuron primary cohort: P2A8
GSM4027443
7_PFC_neuron primary cohort: P2A9
GSM4027445
7_PFC_neuron primary cohort: P2A12
GSM4027447
8_ChIP: input1
GSM4027448
8_ChIP: input2
GSM4027449
8_ChIP: input3
GSM4027450
8_ChIP: AC1
GSM4027451
8_ChIP: AC2
GSM4027452
8_ChIP: AC3
GSM4027453
8_ChIP: ME1
GSM4027454
8_ChIP: ME2
GSM4027455
8_ChIP: ME3
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE135742
Epigenetic inactivation of the autophagy-lysosomal system in the Parkinson’s disease appendix (1: PD_Appendix)
GSE135743
Epigenetic inactivation of the autophagy-lysosomal system in the Parkinson’s disease appendix (2: PD_RNASeq)
GSE135744
Epigenetic inactivation of the autophagy-lysosomal system in the Parkinson’s disease appendix (3: Mice_DSS)
GSE135745
Epigenetic inactivation of the autophagy-lysosomal system in the Parkinson’s disease appendix (4: Mice_rAAV a-syn)
GSE135746
Epigenetic inactivation of the autophagy-lysosomal system in the Parkinson’s disease appendix (5: OFB)
GSE135747
Epigenetic inactivation of the autophagy-lysosomal system in the Parkinson’s disease appendix (6: PFC_neuron replication cohort)
GSE135748
Epigenetic inactivation of the autophagy-lysosomal system in the Parkinson’s disease appendix (7: PFC_neuron primary cohort)
GSE135750
Epigenetic inactivation of the autophagy-lysosomal system in the Parkinson’s disease appendix (8: ChIP)
Relations
BioProject
PRJNA559907
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE135751_RAW.tar
20.0 Gb
(http)
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