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Series GSE135482 Query DataSets for GSE135482
Status Public on May 13, 2020
Title Expression profiles of long noncoding RNAs and mRNAs in A549 cells infected by Influenza virus
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Summary Long noncoding RNAs (lncRNAs) participate in regulating many biological processes. However, their roles in influenza A virus (IAV) pathogenicity are largely unknown. Here, we analyzed the expression profile of lncRNAs and mRNAs in the H3N2-infected cells and H7N9-infected cells by high-throughput sequencing
 
Overall design Expression profiles of long noncoding RNAs and mRNAs in A549 cells infected by H3N2 or H7N9 were generated by deep sequencing, in duplicates, using Illumina Hiseq 3000.
 
Contributor(s) Zhang Y, Yu T, Hu B, Zhou J
Citation(s) 31777011
Submission date Aug 07, 2019
Last update date May 13, 2020
Contact name Hu boli
E-mail(s) Bolihu@zju.edu.cn
Organization name Zijingang Campus of Zhejiang University
Lab Key Laboratory of Animal Virology´╝îMinistry of Agriculture
Street address Yuhangtang Road No.866
City hangzhou
State/province zhejiang
ZIP/Postal code 310058
Country China
 
Platforms (1)
GPL21290 Illumina HiSeq 3000 (Homo sapiens)
Samples (6)
GSM4011111 A549, uninfected-1
GSM4011112 A549, uninfected-2
GSM4011113 A549, infected with H3N2-1
Relations
BioProject PRJNA559077
SRA SRP217663

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE135482_H3N2_VS_A549_isoform_exp_lncRNA_FPKM.txt.gz 248.2 Kb (ftp)(http) TXT
GSE135482_H3N2_VS_A549_isoform_exp_mRNA_FPKM.txt.gz 2.9 Mb (ftp)(http) TXT
GSE135482_H7N9_VS_A549_isoform_exp_lncRNA_FPKM.txt.gz 258.3 Kb (ftp)(http) TXT
GSE135482_H7N9_VS_A549_isoform_exp_mRNA_FPKM.txt.gz 3.1 Mb (ftp)(http) TXT
GSE135482_lncRNA_predict.fa.gz 4.8 Mb (ftp)(http) FA
GSE135482_lncRNA_predict.gtf.gz 133.4 Kb (ftp)(http) GTF
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Raw data are available in SRA
Processed data are available on Series record

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