GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE135186 Query DataSets for GSE135186
Status Public on Nov 11, 2020
Title Single Cell Transcriptional Profile of Col1a1GFP+ cells in health and EAE
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Col1a1GFP+ cells from the spinal cords of healthy mice or mice in the early stages of EAE symptoms were transcriptionally profiled at the single cell level to determine subtypes of Col1+ CNS cells in health and disease
Overall design Spinal cords from Col1a1GFP mice with or without EAE were dissociated into a single cell suspension, GFP+ cells enriched using FACS sorting and sequenced using the 10x genomics v2 pipeline
Contributor(s) Dorrier C, Daneman R
Citation(s) 33526922
Submission date Jul 31, 2019
Last update date Feb 10, 2021
Contact name Cayce Dorrier
Organization name UCSD
Street address 9500 Gilman Drive
City La Jolla
ZIP/Postal code 92093
Country USA
Platforms (2)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (5)
GSM3993136 Col1a1GFP+ cells health 1
GSM3993137 Col1a1GFP+ cells health 2
GSM3993138 Col1a1GFP+ cells EAE
BioProject PRJNA557683
SRA SRP216933

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE135186_RAW.tar 12.4 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap