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Status |
Public on May 23, 2020 |
Title |
Genome-wide analysis of histone modification alteration in EBV(+) GC cell lines (4C-Seq). |
Organism |
Homo sapiens |
Experiment type |
Other
|
Summary |
We analysed epigenetic status in EBV(+) GC cell lines to elucidate their contribution to tumorigenesis by performing ChIP-seq on H3K4me3, H3K4me1, H3K27ac, H3K27me3 and H3K9me3.
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Overall design |
Examination of 5 different histone modifications in EBV(+) gastric cancer cells.
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Contributor(s) |
Okabe A, Fukuyo M, Kaneda A |
Citation(s) |
32719515 |
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Submission date |
Jul 31, 2019 |
Last update date |
Aug 23, 2020 |
Contact name |
Masaki Fukuyo |
E-mail(s) |
fukuyo@chiba-u.jp
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Organization name |
Chiba University
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Department |
Department of Molecular Oncology
|
Street address |
1-8-1 Inohana, Chuo-ku
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City |
Chiba |
ZIP/Postal code |
260-8670 |
Country |
Japan |
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Platforms (2) |
GPL18460 |
Illumina HiSeq 1500 (Homo sapiens) |
GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
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Samples (34)
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This SubSeries is part of SuperSeries: |
GSE135176 |
Genome-wide analysis of histone modification alteration in EBV(+) GC cell lines |
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Relations |
BioProject |
PRJNA557670 |
SRA |
SRP216908 |
Supplementary file |
Size |
Download |
File type/resource |
GSE135174_4Cseq_Bait1_GES1_EBVi.bigwig |
81.2 Mb |
(ftp)(http) |
BIGWIG |
GSE135174_4Cseq_Bait1_MKN7_EBVi.bigwig |
81.2 Mb |
(ftp)(http) |
BIGWIG |
GSE135174_4Cseq_Bait1_NCC24.bigwig |
81.0 Mb |
(ftp)(http) |
BIGWIG |
GSE135174_4Cseq_Bait1_SNU719.bigwig |
82.6 Mb |
(ftp)(http) |
BIGWIG |
GSE135174_4Cseq_Bait1_YCC10.bigwig |
81.9 Mb |
(ftp)(http) |
BIGWIG |
GSE135174_4Cseq_Bait2_GES1_EBVi.bigwig |
81.0 Mb |
(ftp)(http) |
BIGWIG |
GSE135174_4Cseq_Bait2_MKN7_EBVi.bigwig |
81.4 Mb |
(ftp)(http) |
BIGWIG |
GSE135174_4Cseq_Bait2_NCC24.bigwig |
81.1 Mb |
(ftp)(http) |
BIGWIG |
GSE135174_4Cseq_Bait2_SNU719.bigwig |
82.3 Mb |
(ftp)(http) |
BIGWIG |
GSE135174_4Cseq_Bait2_YCC10.bigwig |
82.1 Mb |
(ftp)(http) |
BIGWIG |
GSE135174_4Cseq_MZT1e_MKN7_EBVi.bigwig |
80.6 Mb |
(ftp)(http) |
BIGWIG |
GSE135174_4Cseq_MZT1e_MKN7_WT.bigwig |
81.0 Mb |
(ftp)(http) |
BIGWIG |
GSE135174_4Cseq_MZT1p_MKN7_EBVi.bigwig |
79.7 Mb |
(ftp)(http) |
BIGWIG |
GSE135174_4Cseq_MZT1p_MKN7_WT.bigwig |
80.0 Mb |
(ftp)(http) |
BIGWIG |
GSE135174_4Cseq_MZT1p_NCC24.bigwig |
79.9 Mb |
(ftp)(http) |
BIGWIG |
GSE135174_4Cseq_MZT1p_SNU719.bigwig |
79.5 Mb |
(ftp)(http) |
BIGWIG |
GSE135174_4Cseq_PGRMC2_enhancer1_GES1_EBVi.bigwig |
48.9 Mb |
(ftp)(http) |
BIGWIG |
GSE135174_4Cseq_PGRMC2_enhancer1_GES1_WT.bigwig |
49.0 Mb |
(ftp)(http) |
BIGWIG |
GSE135174_4Cseq_PGRMC2_enhancer2_GES1_EBVi.bigwig |
48.6 Mb |
(ftp)(http) |
BIGWIG |
GSE135174_4Cseq_PGRMC2_enhancer2_GES1_WT.bigwig |
48.7 Mb |
(ftp)(http) |
BIGWIG |
GSE135174_4Cseq_TGFBR2_TSS_MKN7_EBVi.bigwig |
39.2 Mb |
(ftp)(http) |
BIGWIG |
GSE135174_4Cseq_TGFBR2_TSS_MKN7_WT.bigwig |
38.3 Mb |
(ftp)(http) |
BIGWIG |
GSE135174_4Cseq_TGFBR2e_MKN7_EBVi.bigwig |
80.2 Mb |
(ftp)(http) |
BIGWIG |
GSE135174_4Cseq_TGFBR2e_MKN7_WT.bigwig |
81.3 Mb |
(ftp)(http) |
BIGWIG |
GSE135174_4Cseq_episomalVec_1_MKN7_WT.bigwig |
82.1 Mb |
(ftp)(http) |
BIGWIG |
GSE135174_4Cseq_episomalVec_2_MKN7_WT.bigwig |
39.1 Mb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
Raw data are available in SRA |
Processed data are available on Series record |