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Series GSE135174 Query DataSets for GSE135174
Status Public on May 23, 2020
Title Genome-wide analysis of histone modification alteration in EBV(+) GC cell lines (4C-Seq).
Organism Homo sapiens
Experiment type Other
Summary We analysed epigenetic status in EBV(+) GC cell lines to elucidate their contribution to tumorigenesis by performing ChIP-seq on H3K4me3, H3K4me1, H3K27ac, H3K27me3 and H3K9me3.
Overall design Examination of 5 different histone modifications in EBV(+) gastric cancer cells.
Contributor(s) Okabe A, Fukuyo M, Kaneda A
Citation(s) 32719515
Submission date Jul 31, 2019
Last update date Aug 23, 2020
Contact name Masaki Fukuyo
Organization name Chiba University
Department Department of Molecular Oncology
Street address 1-8-1 Inohana, Chuo-ku
City Chiba
ZIP/Postal code 260-8670
Country Japan
Platforms (2)
GPL18460 Illumina HiSeq 1500 (Homo sapiens)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (34)
GSM3991498 4Cseq_Bait1_MKN7_EBVi
GSM3991499 4Cseq_Bait2_MKN7_EBVi
GSM3991500 4Cseq_Bait1_SNU719_Rep1
This SubSeries is part of SuperSeries:
GSE135176 Genome-wide analysis of histone modification alteration in EBV(+) GC cell lines
BioProject PRJNA557670
SRA SRP216908

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE135174_4Cseq_Bait1_GES1_EBVi.bigwig 81.2 Mb (ftp)(http) BIGWIG
GSE135174_4Cseq_Bait1_MKN7_EBVi.bigwig 81.2 Mb (ftp)(http) BIGWIG
GSE135174_4Cseq_Bait1_NCC24.bigwig 81.0 Mb (ftp)(http) BIGWIG
GSE135174_4Cseq_Bait1_SNU719.bigwig 82.6 Mb (ftp)(http) BIGWIG
GSE135174_4Cseq_Bait1_YCC10.bigwig 81.9 Mb (ftp)(http) BIGWIG
GSE135174_4Cseq_Bait2_GES1_EBVi.bigwig 81.0 Mb (ftp)(http) BIGWIG
GSE135174_4Cseq_Bait2_MKN7_EBVi.bigwig 81.4 Mb (ftp)(http) BIGWIG
GSE135174_4Cseq_Bait2_NCC24.bigwig 81.1 Mb (ftp)(http) BIGWIG
GSE135174_4Cseq_Bait2_SNU719.bigwig 82.3 Mb (ftp)(http) BIGWIG
GSE135174_4Cseq_Bait2_YCC10.bigwig 82.1 Mb (ftp)(http) BIGWIG
GSE135174_4Cseq_MZT1e_MKN7_EBVi.bigwig 80.6 Mb (ftp)(http) BIGWIG
GSE135174_4Cseq_MZT1e_MKN7_WT.bigwig 81.0 Mb (ftp)(http) BIGWIG
GSE135174_4Cseq_MZT1p_MKN7_EBVi.bigwig 79.7 Mb (ftp)(http) BIGWIG
GSE135174_4Cseq_MZT1p_MKN7_WT.bigwig 80.0 Mb (ftp)(http) BIGWIG
GSE135174_4Cseq_MZT1p_NCC24.bigwig 79.9 Mb (ftp)(http) BIGWIG
GSE135174_4Cseq_MZT1p_SNU719.bigwig 79.5 Mb (ftp)(http) BIGWIG
GSE135174_4Cseq_PGRMC2_enhancer1_GES1_EBVi.bigwig 48.9 Mb (ftp)(http) BIGWIG
GSE135174_4Cseq_PGRMC2_enhancer1_GES1_WT.bigwig 49.0 Mb (ftp)(http) BIGWIG
GSE135174_4Cseq_PGRMC2_enhancer2_GES1_EBVi.bigwig 48.6 Mb (ftp)(http) BIGWIG
GSE135174_4Cseq_PGRMC2_enhancer2_GES1_WT.bigwig 48.7 Mb (ftp)(http) BIGWIG
GSE135174_4Cseq_TGFBR2_TSS_MKN7_EBVi.bigwig 39.2 Mb (ftp)(http) BIGWIG
GSE135174_4Cseq_TGFBR2_TSS_MKN7_WT.bigwig 38.3 Mb (ftp)(http) BIGWIG
GSE135174_4Cseq_TGFBR2e_MKN7_EBVi.bigwig 80.2 Mb (ftp)(http) BIGWIG
GSE135174_4Cseq_TGFBR2e_MKN7_WT.bigwig 81.3 Mb (ftp)(http) BIGWIG
GSE135174_4Cseq_episomalVec_1_MKN7_WT.bigwig 82.1 Mb (ftp)(http) BIGWIG
GSE135174_4Cseq_episomalVec_2_MKN7_WT.bigwig 39.1 Mb (ftp)(http) BIGWIG
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