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Series GSE134306 Query DataSets for GSE134306
Status Public on Oct 15, 2020
Title Genome-wide Chromatin Accessibility and Sequencing of HPEKs
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We report ATAC-seq (Assay for Transposase-Accessible Chromatin) on HPEKs treated in culture for 6h and 48h (6h+42h wash-out) with either 125nM NVS-BET1, 125nM NVS-BET2, or 0.0125% DMSO as control in triplicate per condition.
Overall design Examination of genome-wide chormatin accessibility
Contributor(s) Roma G, Kirkland S, Hauer C, Bergling S, Lohmann F
Citation(s) 33462494
Submission date Jul 15, 2019
Last update date Jan 19, 2021
Contact name Guglielmo Roma
Organization name Novartis Institutes for Biomedical Research
Street address Fabrikstrasse 22
City Basel
ZIP/Postal code 4056
Country Switzerland
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (18)
GSM4647364 atac_hpek_DMSO_6h_1
GSM4647365 atac_hpek_DMSO_6h_2
GSM4647366 atac_hpek_DMSO_6h_3
BioProject PRJNA554676
SRA SRP214681

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Supplementary file Size Download File type/resource
GSE134306_RAW.tar 12.5 Gb (http)(custom) TAR (of BIGWIG)
GSE134306_atac_hpek_DMSO_48h_NARROWPEAK.bed.gz 7.0 Mb (ftp)(http) BED
GSE134306_atac_hpek_DMSO_6h_NARROWPEAK.bed.gz 7.5 Mb (ftp)(http) BED
GSE134306_atac_hpek_NVS-BET1_48h_NARROWPEAK.bed.gz 7.2 Mb (ftp)(http) BED
GSE134306_atac_hpek_NVS-BET1_6h_NARROWPEAK.bed.gz 7.3 Mb (ftp)(http) BED
GSE134306_atac_hpek_NVS-BET2_48h_NARROWPEAK.bed.gz 7.4 Mb (ftp)(http) BED
GSE134306_atac_hpek_NVS-BET2_6h_NARROWPEAK.bed.gz 7.2 Mb (ftp)(http) BED
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Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file

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