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Series GSE133945 Query DataSets for GSE133945
Status Public on Dec 31, 2021
Title Cross-presentation by dendritic cells is limited by non-canonical autophagy.
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary RNA-seq profiling of antigen presentation pathway in bone marrow-derived dendritic cells.
Overall design FLT3L-derived BMDCs from Rubcn KO or WT mice under various treatment conditions, in triplicate.
Contributor(s) Zhang Y, Sil P, Martinez J, Grimm S
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Submission date Jul 08, 2019
Last update date Jan 01, 2022
Contact name Jennifer Martinez
Phone 9842874089
Organization name NIEHS
Lab Jennifer Martinez
Street address 111 TW Alexander Dr.
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (30)
GSM3930477 RubKO-30min_apopJC-rep1
GSM3930478 RubKO-30min_apopJC-rep2
GSM3930479 RubKO-30min_apopJC-rep3
BioProject PRJNA553189
SRA SRP213633

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE133945_RAW.tar 4.5 Gb (http)(custom) TAR (of BIGWIG)
GSE133945_counts-per-gene.allSamples.txt.gz 1.3 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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