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Series GSE133945 Query DataSets for GSE133945
Status Public on Dec 31, 2021
Title Cross-presentation by dendritic cells is limited by non-canonical autophagy.
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary RNA-seq profiling of antigen presentation pathway in bone marrow-derived dendritic cells.
 
Overall design FLT3L-derived BMDCs from Rubcn KO or WT mice under various treatment conditions, in triplicate.
 
Contributor(s) Zhang Y, Sil P, Martinez J, Grimm S
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Jul 08, 2019
Last update date Jan 01, 2022
Contact name Jennifer Martinez
E-mail(s) jennifer.martinez3@nih.gov
Phone 9842874089
Organization name NIEHS
Lab Jennifer Martinez
Street address 111 TW Alexander Dr.
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (30)
GSM3930477 RubKO-30min_apopJC-rep1
GSM3930478 RubKO-30min_apopJC-rep2
GSM3930479 RubKO-30min_apopJC-rep3
Relations
BioProject PRJNA553189
SRA SRP213633

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE133945_RAW.tar 4.5 Gb (http)(custom) TAR (of BIGWIG)
GSE133945_counts-per-gene.allSamples.txt.gz 1.3 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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