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Series GSE133344 Query DataSets for GSE133344
Status Public on Aug 08, 2019
Title Exploring genetic interaction manifolds constructed from rich phenotypes
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Rich phenotyping using single-cell RNA sequencing reveals principles and mechanisms of genetic interactions.
Overall design Single-cell, pooled CRISPR screening experiment comparing the transcriptional effects of overexpressing genes alone or in combination
Contributor(s) Norman TM, Horlbeck MA, Gilbert LA, Weissman JS
Citation(s) 31395745
Submission date Jun 26, 2019
Last update date Apr 23, 2020
Contact name Thomas Norman
Organization name University of California, San Francisco
Department CMP
Lab Weissman
Street address Biochemistry Box 2542, 1700 4th St QB3 Rm 404
City San Francisco
State/province CA
ZIP/Postal code 94103
Country USA
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (16)
GSM3906020 sgRNA perturb-seq experiment (gemgroup 1)
GSM3906021 sgRNA perturb-seq experiment (gemgroup 2)
GSM3906022 sgRNA perturb-seq experiment (gemgroup 3)
BioProject PRJNA551220
SRA SRP212114

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE133344_RAW.tar 10.1 Gb (http)(custom) TAR (of H5)
GSE133344_filtered_barcodes.tsv.gz 419.9 Kb (ftp)(http) TSV
GSE133344_filtered_cell_identities.csv.gz 1.9 Mb (ftp)(http) CSV
GSE133344_filtered_genes.tsv.gz 258.6 Kb (ftp)(http) TSV
GSE133344_filtered_matrix.mtx.gz 1.1 Gb (ftp)(http) MTX
GSE133344_raw_barcodes.tsv.gz 17.4 Mb (ftp)(http) TSV
GSE133344_raw_cell_identities.csv.gz 2.1 Mb (ftp)(http) CSV
GSE133344_raw_genes.tsv.gz 258.6 Kb (ftp)(http) TSV
GSE133344_raw_matrix.mtx.gz 1.3 Gb (ftp)(http) MTX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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