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| Status |
Public on Jun 28, 2019 |
| Title |
Effects of transcription on genome - nuclear lamina interactions |
| Organisms |
Homo sapiens; Mus musculus |
| Experiment type |
Other
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Jun 25, 2019 |
| Last update date |
Jun 30, 2019 |
| Contact name |
Bas van Steensel |
| E-mail(s) |
b.v.steensel@nki.nl
|
| Phone |
+ 31 20 512 2040
|
| Fax |
+31 20 669 1383
|
| URL |
http://www.nki.nl/nkidep/vansteensel
|
| Organization name |
Netherlands Cancer Institute
|
| Department |
division of Molecular Biology
|
| Lab |
van Steensel group
|
| Street address |
Plesmanlaan 121
|
| City |
Amsterdam |
| ZIP/Postal code |
1066 CX |
| Country |
Netherlands |
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| Platforms (3) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
|
| Samples (174)
|
| GSM3904474 |
DamID, Dam, F121-9 clone CM1417, rep4 |
| GSM3904475 |
DamID, Dam, F121-9 clone CM1420, rep1 |
| GSM3904476 |
DamID, Dam, F121-9 clone CM1420, rep2 |
| GSM3904477 |
DamID, Dam, F121-9 clone CM1420, rep3 |
| GSM3904478 |
DamID, Dam, F121-9 clone CM1420, rep4 |
| GSM3904479 |
DamID, Dam, F121-9, TALE-VP64, Nrp1, rep1 |
| GSM3904480 |
DamID, Dam, F121-9, TALE-VP64, Nrp1, rep2 |
| GSM3904481 |
DamID, Dam, F121-9, TALE-VP64, Sox6, rep1 |
| GSM3904482 |
DamID, Dam, F121-9, TALE-VP64, Sox6, rep2 |
| GSM3904483 |
DamID, Dam, RPE, CRISPRa, control, rep1 |
| GSM3904484 |
DamID, Dam, RPE, CRISPRa, control, rep2 |
| GSM3904485 |
DamID, Dam, RPE, CRISPRa, ABCB1, rep1 |
| GSM3904486 |
DamID, Dam, RPE, CRISPRa, ABCB1, rep2 |
| GSM3904487 |
DamID, Dam, RPE, CRISPRa, ADAM22, rep1 |
| GSM3904488 |
DamID, Dam, RPE, CRISPRa, ADAM22, rep2 |
| GSM3904489 |
DamID, Dam, RPE, CRISPRa, CCSER1, rep1 |
| GSM3904490 |
DamID, Dam, RPE, CRISPRa, CCSER1, rep2 |
| GSM3904491 |
DamID, Dam, RPE, CRISPRa, GRID2, rep1 |
| GSM3904492 |
DamID, Dam, RPE, CRISPRa, GRID2, rep2 |
| GSM3904493 |
DamID, Dam, RPE, CRISPRa, KIAA1804, rep1 |
| GSM3904494 |
DamID, Dam, RPE, CRISPRa, KIAA1804, rep2 |
| GSM3904495 |
DamID, Dam, RPE, CRISPRa, NLGN1, rep1 |
| GSM3904496 |
DamID, Dam, RPE, CRISPRa, NLGN1, rep2 |
| GSM3904497 |
DamID, Dam, RPE, CRISPRa, PCNX2, rep1 |
| GSM3904498 |
DamID, Dam, RPE, CRISPRa, PCNX2, rep2 |
| GSM3904499 |
DamID, Dam, RPE, CRISPRa, PTN, rep1 |
| GSM3904500 |
DamID, Dam, RPE, CRISPRa, PTN, rep2 |
| GSM3904501 |
DamID, Dam, RPE, CRISPRa, SLC35F3, rep1 |
| GSM3904502 |
DamID, Dam, RPE, CRISPRa, SOX6, rep1 |
| GSM3904503 |
DamID, Dam, RPE, CRISPRa, SOX6, rep2 |
| GSM3904504 |
DamID, Dam, RPE, CRISPRa, TRAM1L1, rep1 |
| GSM3904505 |
DamID, Dam, RPE, CRISPRa, TRAM1L1, rep2 |
| GSM3904506 |
DamID, Dam, RPE, CRISPRa, ZNF804B, rep1 |
| GSM3904507 |
DamID, Dam, RPE, CRISPRa, ZNF804B, rep2 |
| GSM3904508 |
DamID, Dam, RPE, CRISPRa, CCSER1+GRID2, rep1 |
| GSM3904509 |
DamID, Dam, RPE, CRISPRa, CCSER1+GRID2, rep2 |
| GSM3904510 |
DamID, Dam, RPE, CRISPRa, ABCB4+ABCB1+ADAM22+RUNDC3B, rep1 |
| GSM3904511 |
DamID, Dam, RPE, CRISPRa, ABCB4+ABCB1+ADAM22+RUNDC3B, rep2 |
| GSM3904512 |
DamID, Dam, F121-9, Morc1 Cdel, cloneA6, rep1 |
| GSM3904513 |
DamID, Dam, F121-9, Morc1 Cdel, cloneA6, rep2 |
| GSM3904514 |
DamID, Dam, F121-9, Morc1 Cdel, cloneA6, rep3 |
| GSM3904515 |
DamID, Dam, F121-9, Morc1 Cdel, cloneA6, rep4 |
| GSM3904516 |
DamID, Dam, F121-9, Morc1 Cdel, cloneE2, rep1 |
| GSM3904517 |
DamID, Dam, F121-9, Morc1 Cdel, cloneE2, rep2 |
| GSM3904518 |
DamID, Dam, F121-9, Morc1 Cdel, cloneE2, rep3 |
| GSM3904519 |
DamID, Dam, F121-9, Morc1 Cdel, cloneE2, rep4 |
| GSM3904520 |
DamID, Dam, F121-9, Morc1 ABCdel, cloneA12, rep1 |
| GSM3904521 |
DamID, Dam, F121-9, Morc1 ABCdel, cloneA12, rep2 |
| GSM3904522 |
DamID, Dam, F121-9, Morc1 ABCdel, cloneA12, rep3 |
| GSM3904523 |
DamID, Dam, F121-9, Morc1 ABCdel, cloneA12, rep4 |
| GSM3904524 |
DamID, Dam, F121-9, Morc1 ABCdel, cloneB11, rep1 |
| GSM3904525 |
DamID, Dam, F121-9, Morc1 ABCdel, cloneB11, rep2 |
| GSM3904526 |
DamID, Dam, F121-9, Morc1 ABCdel, cloneB11, rep3 |
| GSM3904527 |
DamID, Dam, F121-9, Morc1 ABCdel, cloneB11, rep4 |
| GSM3904528 |
DamID, Dam, F121-9, PASins Cobl, rep1 |
| GSM3904529 |
DamID, Dam, F121-9, PASins Cobl, rep2 |
| GSM3904530 |
DamID, Dam, F121-9, PASins Cobl, rep3 |
| GSM3904531 |
DamID, Dam, F121-9, PASins Cobl, rep4 |
| GSM3904532 |
DamID, Dam, F121-9, PASins Cobl, rep5 |
| GSM3904533 |
DamID, Dam, F121-9, PASins Cobl, rep6 |
| GSM3904534 |
DamID, Dam, F121-9, PASins Cobl, rep7 |
| GSM3904535 |
DamID, Dam, F121-9, PASins Cobl, rep8 |
| GSM3904536 |
DamID, Dam-LMNB1, F121-9 clone CM1417, rep1 |
| GSM3904537 |
DamID, Dam-LMNB1, F121-9 clone CM1417, rep2 |
| GSM3904538 |
DamID, Dam-LMNB1, F121-9 clone CM1417, rep3 |
| GSM3904539 |
DamID, Dam-LMNB1, F121-9 clone CM1417, rep4 |
| GSM3904540 |
DamID, Dam-LMNB1, F121-9 clone CM1420, rep1 |
| GSM3904541 |
DamID, Dam-LMNB1, F121-9 clone CM1420, rep2 |
| GSM3904542 |
DamID, Dam-LMNB1, F121-9 clone CM1420, rep3 |
| GSM3904543 |
DamID, Dam-LMNB1, F121-9 clone CM1420, rep4 |
| GSM3904544 |
DamID, Dam-LMNB1, F121-9, TALE-VP64, Nrp1, rep1 |
| GSM3904545 |
DamID, Dam-LMNB1, F121-9, TALE-VP64, Nrp1, rep2 |
| GSM3904546 |
DamID, Dam-LMNB1, F121-9, TALE-VP64, Sox6, rep1 |
| GSM3904547 |
DamID, Dam-LMNB1, F121-9, TALE-VP64, Sox6, rep2 |
| GSM3904548 |
DamID, Dam-LMNB1, RPE, CRISPRa, control, rep1 |
| GSM3904549 |
DamID, Dam-LMNB1, RPE, CRISPRa, control, rep2 |
| GSM3904550 |
DamID, Dam-LMNB1, RPE, CRISPRa, ABCB1, rep1 |
| GSM3904551 |
DamID, Dam-LMNB1, RPE, CRISPRa, ABCB1, rep2 |
| GSM3904552 |
DamID, Dam-LMNB1, RPE, CRISPRa, ADAM22, rep1 |
| GSM3904553 |
DamID, Dam-LMNB1, RPE, CRISPRa, ADAM22, rep2 |
| GSM3904554 |
DamID, Dam-LMNB1, RPE, CRISPRa, CCSER1, rep1 |
| GSM3904555 |
DamID, Dam-LMNB1, RPE, CRISPRa, CCSER1, rep2 |
| GSM3904556 |
DamID, Dam-LMNB1, RPE, CRISPRa, GRID2, rep1 |
| GSM3904557 |
DamID, Dam-LMNB1, RPE, CRISPRa, GRID2, rep2 |
| GSM3904558 |
DamID, Dam-LMNB1, RPE, CRISPRa, KIAA1804, rep1 |
| GSM3904559 |
DamID, Dam-LMNB1, RPE, CRISPRa, KIAA1804, rep2 |
| GSM3904560 |
DamID, Dam-LMNB1, RPE, CRISPRa, NLGN1, rep1 |
| GSM3904561 |
DamID, Dam-LMNB1, RPE, CRISPRa, NLGN1, rep2 |
| GSM3904562 |
DamID, Dam-LMNB1, RPE, CRISPRa, PCNX2, rep1 |
| GSM3904563 |
DamID, Dam-LMNB1, RPE, CRISPRa, PCNX2, rep2 |
| GSM3904564 |
DamID, Dam-LMNB1, RPE, CRISPRa, PTN, rep1 |
| GSM3904565 |
DamID, Dam-LMNB1, RPE, CRISPRa, PTN, rep2 |
| GSM3904566 |
DamID, Dam-LMNB1, RPE, CRISPRa, SLC35F3, rep1 |
| GSM3904567 |
DamID, Dam-LMNB1, RPE, CRISPRa, SOX6, rep1 |
| GSM3904568 |
DamID, Dam-LMNB1, RPE, CRISPRa, SOX6, rep2 |
| GSM3904569 |
DamID, Dam-LMNB1, RPE, CRISPRa, TRAM1L1, rep1 |
| GSM3904570 |
DamID, Dam-LMNB1, RPE, CRISPRa, TRAM1L1, rep2 |
| GSM3904571 |
DamID, Dam-LMNB1, RPE, CRISPRa, ZNF804B, rep1 |
| GSM3904572 |
DamID, Dam-LMNB1, RPE, CRISPRa, ZNF804B, rep2 |
| GSM3904573 |
DamID, Dam-LMNB1, RPE, CRISPRa, CCSER1+GRID2, rep1 |
| GSM3904574 |
DamID, Dam-LMNB1, RPE, CRISPRa, CCSER1+GRID2, rep2 |
| GSM3904575 |
DamID, Dam-LMNB1, RPE, CRISPRa, ABCB4+ABCB1+ADAM22+RUNDC3B, rep1 |
| GSM3904576 |
DamID, Dam-LMNB1, RPE, CRISPRa, ABCB4+ABCB1+ADAM22+RUNDC3B, rep2 |
| GSM3904577 |
DamID, Dam-LMNB1, F121-9, Morc1 Cdel, cloneA6, rep1 |
| GSM3904578 |
DamID, Dam-LMNB1, F121-9, Morc1 Cdel, cloneA6, rep2 |
| GSM3904579 |
DamID, Dam-LMNB1, F121-9, Morc1 Cdel, cloneA6, rep3 |
| GSM3904580 |
DamID, Dam-LMNB1, F121-9, Morc1 Cdel, cloneA6, rep4 |
| GSM3904581 |
DamID, Dam-LMNB1, F121-9, Morc1 Cdel, cloneE2, rep1 |
| GSM3904582 |
DamID, Dam-LMNB1, F121-9, Morc1 Cdel, cloneE2, rep2 |
| GSM3904583 |
DamID, Dam-LMNB1, F121-9, Morc1 Cdel, cloneE2, rep3 |
| GSM3904584 |
DamID, Dam-LMNB1, F121-9, Morc1 Cdel, cloneE2, rep4 |
| GSM3904585 |
DamID, Dam-LMNB1, F121-9, Morc1 ABCdel, cloneA12, rep1 |
| GSM3904586 |
DamID, Dam-LMNB1, F121-9, Morc1 ABCdel, cloneA12, rep2 |
| GSM3904587 |
DamID, Dam-LMNB1, F121-9, Morc1 ABCdel, cloneA12, rep3 |
| GSM3904588 |
DamID, Dam-LMNB1, F121-9, Morc1 ABCdel, cloneA12, rep4 |
| GSM3904589 |
DamID, Dam-LMNB1, F121-9, Morc1 ABCdel, cloneB11, rep1 |
| GSM3904590 |
DamID, Dam-LMNB1, F121-9, Morc1 ABCdel, cloneB11, rep2 |
| GSM3904591 |
DamID, Dam-LMNB1, F121-9, Morc1 ABCdel, cloneB11, rep3 |
| GSM3904592 |
DamID, Dam-LMNB1, F121-9, Morc1 ABCdel, cloneB11, rep4 |
| GSM3904593 |
DamID, Dam-LMNB1, F121-9, PASins Cobl, rep1 |
| GSM3904594 |
DamID, Dam-LMNB1, F121-9, PASins Cobl, rep2 |
| GSM3904595 |
DamID, Dam-LMNB1, F121-9, PASins Cobl, rep3 |
| GSM3904596 |
DamID, Dam-LMNB1, F121-9, PASins Cobl, rep4 |
| GSM3904597 |
DamID, Dam-LMNB1, F121-9, PASins Cobl, rep5 |
| GSM3904598 |
DamID, Dam-LMNB1, F121-9, PASins Cobl, rep6 |
| GSM3904599 |
DamID, Dam-LMNB1, F121-9, PASins Cobl, rep7 |
| GSM3904600 |
DamID, Dam-LMNB1, F121-9, PASins Cobl, rep8 |
| GSM3904601 |
RNA-seq, RPE, CRISPRa, ctrl, rep1 [4861_1_CM1502_CGATGTA] |
| GSM3904602 |
RNA-seq, RPE, CRISPRa, ctrl, rep2 [4862_1_CM1502_ATCACGA] |
| GSM3904603 |
RNA-seq, RPE, CRISPRa, ABCB1, rep1 [4861_9_plb186_ATGTCAG] |
| GSM3904604 |
RNA-seq, RPE, CRISPRa, ABCB1, rep2 [4862_9_plb186_CGTACGT] |
| GSM3904605 |
RNA-seq, RPE, CRISPRa, ADAM22, rep1 [4861_10_plb187_CCGTCCC] |
| GSM3904606 |
RNA-seq, RPE, CRISPRa, ADAM22, rep2 [4862_10_plb187_GAGTGGA] |
| GSM3904607 |
RNA-seq, RPE, CRISPRa, CCSER1, rep1 [4861_5_plb170_CAGATCA] |
| GSM3904608 |
RNA-seq, RPE, CRISPRa, CCSER1, rep2 [4862_5_plb170_TAGCTTA] |
| GSM3904609 |
RNA-seq, RPE, CRISPRa, GRID2, rep1 [4861_6_plb171_CTTGTAA] |
| GSM3904610 |
RNA-seq, RPE, CRISPRa, GRID2, rep2 [4862_6_plb171_GGCTACA] |
| GSM3904611 |
RNA-seq, RPE, CRISPRa, MLK4, rep1 [4861_8_plb182_AGTTCCG] |
| GSM3904612 |
RNA-seq, RPE, CRISPRa, MLK4, rep2 [4862_8_plb182_GTTTCGG] |
| GSM3904613 |
RNA-seq, RPE, CRISPRa, PCNX2, rep1 [4861_7_plb181_AGTCAAC] |
| GSM3904614 |
RNA-seq, RPE, CRISPRa, PCNX2, rep2 [4862_7_plb181_GTGGCCT] |
| GSM3904615 |
RNA-seq, RPE, CRISPRa, PTN, rep1 [4861_3_plb162_ACAGTGA] |
| GSM3904616 |
RNA-seq, RPE, CRISPRa, PTN, rep2 [4862_3_plb162_ACTTGAA] |
| GSM3904617 |
RNA-seq, RPE, CRISPRa, SOX6, rep1 [4861_4_plb163_GCCAATA] |
| GSM3904618 |
RNA-seq, RPE, CRISPRa, SOX6, rep2 [4862_4_plb163_GATCAGA] |
| GSM3904619 |
RNA-seq, RPE, CRISPRa, ABCB4+ABCB1+ADAM22+RUNDC3B, rep1 [4861_11_plb184_3_GTCCGCA] |
| GSM3904620 |
RNA-seq, RPE, CRISPRa, ABCB4+ABCB1+ADAM22+RUNDC3B, rep2 [4862_11_plb184_3_ACTGATA] |
| GSM3908057 |
Repli-seq, early, RPE, CRISPRa, ABCB1, rep1 |
| GSM3908058 |
Repli-seq, early, RPE, CRISPRa, ABCB1, rep2 |
| GSM3908059 |
Repli-seq, early, RPE, CRISPRa, ADAM22, rep1 |
| GSM3908060 |
Repli-seq, early, RPE, CRISPRa, ADAM22, rep2 |
| GSM3908061 |
Repli-seq, early, RPE, CRISPRa, CCSER1, rep1 |
| GSM3908062 |
Repli-seq, early, RPE, CRISPRa, CCSER1, rep2 |
| GSM3908063 |
Repli-seq, early, RPE, CRISPRa, GRID2, rep1 |
| GSM3908064 |
Repli-seq, early, RPE, CRISPRa, GRID2, rep2 |
| GSM3908065 |
Repli-seq, early, RPE, CRISPRa, CCSER1+GRID2, rep1 |
| GSM3908066 |
Repli-seq, early, RPE, CRISPRa, CCSER1+GRID2, rep2 |
| GSM3908067 |
Repli-seq, early, RPE, CRISPRa, PTN, rep1 |
| GSM3908068 |
Repli-seq, early, RPE, CRISPRa, PTN, rep2 |
| GSM3908069 |
Repli-seq, late, RPE, CRISPRa, ABCB1, rep1 |
| GSM3908070 |
Repli-seq, late, RPE, CRISPRa, ABCB1, rep2 |
| GSM3908071 |
Repli-seq, late, RPE, CRISPRa, ADAM22, rep1 |
| GSM3908072 |
Repli-seq, late, RPE, CRISPRa, ADAM22, rep2 |
| GSM3908073 |
Repli-seq, late, RPE, CRISPRa, CCSER1, rep1 |
| GSM3908074 |
Repli-seq, late, RPE, CRISPRa, CCSER1, rep2 |
| GSM3908075 |
Repli-seq, late, RPE, CRISPRa, GRID2, rep1 |
| GSM3908076 |
Repli-seq, late, RPE, CRISPRa, GRID2, rep2 |
| GSM3908077 |
Repli-seq, late, RPE, CRISPRa, PTN, rep1 |
| GSM3908078 |
Repli-seq, late, RPE, CRISPRa, PTN, rep2 |
| GSM3908079 |
Repli-seq, late, RPE, CRISPRa, CCSER1+GRID2, rep1 |
| GSM3908080 |
Repli-seq, late, RPE, CRISPRa, CCSER1+GRID2, rep2 |
|
| This SuperSeries is composed of the following SubSeries: |
| GSE133272 |
Effects of transcription on genome - nuclear lamina interactions: DamID-seq data |
| GSE133273 |
Effects of transcription on genome - nuclear lamina interactions: RNA-seq data |
| GSE133274 |
Effects of transcription on genome - nuclear lamina interactions: Repli-seq data |
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| Relations |
| BioProject |
PRJNA551381 |
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