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Series GSE133165 Query DataSets for GSE133165
Status Public on Apr 01, 2020
Title Chromatin Hyperacetylation Impacts Chromosome Folding by Forming a Nuclear Subcompartment
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
Overall design Refer to individual Series
Citation(s) 32243828
NIH grant(s)
Grant ID Grant title Affiliation Name
DP5 OD024587 Biochemical Basis of Chromatin Folding and Chromosome Condensation NORTHWESTERN UNIVERSITY AT CHICAGO Kyle Patrick Eagen
Submission date Jun 21, 2019
Last update date Jul 01, 2020
Contact name Kyle Eagen
Organization name Baylor College of Medicine
Department Department of Molecular and Cellular Biology
Lab Eagen Lab
Street address 1 Baylor Plaza
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
Platforms (4)
GPL15520 Illumina MiSeq (Homo sapiens)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
GPL20795 HiSeq X Ten (Homo sapiens)
Samples (101)
GSM3900432 293TRex_uninduced_H3K27ac_replicate1 (ChIP-seq)
GSM3900433 293TRex_uninduced_H3K27ac_replicate2 (ChIP-seq)
GSM3900434 293TRex_induced_H3K27ac_replicate1 (ChIP-seq)
This SuperSeries is composed of the following SubSeries:
GSE133122 ChIP-seq Profiling of Histone H3K27ac, BRD4-NUT, and RNA Polymerase II Chromatin Localization During Megadomain Formation/Removal and RNA Polymerase II Inhibition
GSE133163 Hi-C to Identify Interactions between Distant Genomic Loci due to BRD4-NUT-mediated Megadomain Formation
GSE133164 Transient Transcriptome Sequencing (TT-seq) of Nascent Gene Expression upon BRD4-NUT Protein Degradation/Recovery and RNA Polymerase II Inhibition
BioProject PRJNA550123

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE133165_RAW.tar 60.8 Gb (http)(custom) TAR (of BW, HIC)
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