|
| Status |
Public on Feb 01, 2021 |
| Title |
A first exon termination checkpoint that preferentially suppresses extragenic transcription [RNASEQ1_BMDM_4sU] |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Wdr82 and Zc3h4 repress transcription at extragenic sites.
|
| |
|
| Overall design |
Transcriptome analysis to measure transcription in cells depleted of Wdr82, Zc3h4or other known termination factors.
|
| |
|
| Contributor(s) |
Austenaa LM, Piccolo V, Russo M, Prosperini E, Polletti S, Barozzi I, Diaferia G, Natoli G |
| Citation(s) |
33767452 |
| Submission date |
Jun 20, 2019 |
| Last update date |
May 03, 2021 |
| Contact name |
Viviana Piccolo |
| E-mail(s) |
viviana.piccolo@ieo.it
|
| Organization name |
European Institute of Oncology (IEO)
|
| Department |
Department of Experimental Oncology
|
| Lab |
Gioacchino Natoli Lab
|
| Street address |
Via Adamello 16
|
| City |
Milano |
| State/province |
Milano |
| ZIP/Postal code |
20139 |
| Country |
Italy |
| |
|
| Platforms (3) |
| GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
|
| Samples (45)
|
|
| This SubSeries is part of SuperSeries: |
| GSE133109 |
A first exon termination checkpoint that preferentially suppresses extragenic transcription |
|
| Relations |
| BioProject |
PRJNA549950 |
| SRA |
SRP202030 |
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