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Series GSE131800 Query DataSets for GSE131800
Status Public on Aug 21, 2019
Title mouse lung single cell RNA-seq
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Single cell RNA-seq profiling adult mouse lung cells reveal the cell heterogeneity and mechanism during lung fibrosis process.
Overall design Single cell RNA-seq using 10x chromium system on 4 different experiment groups (WTD0, Sdc1D0, WTBleoD21, Sdc1BleoD21), we have pooled cells from three different animal together for each group, and mixed immune cells (DAPI-, CD31-, Epcam-,CD45+), endothelial cells ( DAPI-, CD45-, Epcam-, CD31+), epithelial cells (DAPI-, CD31-, CD45-, Epcam+), stromal cells ( DAPI1-, CD31-, CD45-, Epcam-) in proportion to generate equal represent of each cell type.
Contributor(s) Yao C, Parimon T, Chen P, Stripp BR
Citation(s) 31393853
Submission date May 27, 2019
Last update date Aug 24, 2019
Contact name Changfu Yao
Phone 424-315-4333
Organization name cedars-sinai medical center
Department Lung and Regenerative Medicine Institutes
Lab Stripp Lab
Street address 8700 Beverly Blvd. AHSP Room A9401
City los angeles
State/province Ca
ZIP/Postal code 90048
Country USA
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (4)
GSM3819978 WTD0
GSM3819979 Sdc1D0
GSM3819980 WTBleoD21
BioProject PRJNA544965
SRA SRP199584

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE131800_RAW.tar 58.6 Mb (http)(custom) TAR (of H5)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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