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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Aug 21, 2019 |
| Title |
mouse lung single cell RNA-seq |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Single cell RNA-seq profiling adult mouse lung cells reveal the cell heterogeneity and mechanism during lung fibrosis process.
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| Overall design |
Single cell RNA-seq using 10x chromium system on 4 different experiment groups (WTD0, Sdc1D0, WTBleoD21, Sdc1BleoD21), we have pooled cells from three different animal together for each group, and mixed immune cells (DAPI-, CD31-, Epcam-,CD45+), endothelial cells ( DAPI-, CD45-, Epcam-, CD31+), epithelial cells (DAPI-, CD31-, CD45-, Epcam+), stromal cells ( DAPI1-, CD31-, CD45-, Epcam-) in proportion to generate equal represent of each cell type.
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| Contributor(s) |
Yao C, Parimon T, Chen P, Stripp BR |
| Citation(s) |
31393853 |
| Submission date |
May 27, 2019 |
| Last update date |
Aug 24, 2019 |
| Contact name |
Changfu Yao |
| E-mail(s) |
changfu.yao@cshs.org
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| Phone |
424-315-4333
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| Organization name |
cedars-sinai medical center
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| Department |
Lung and Regenerative Medicine Institutes
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| Lab |
Stripp Lab
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| Street address |
8700 Beverly Blvd. AHSP Room A9401
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| City |
los angeles |
| State/province |
Ca |
| ZIP/Postal code |
90048 |
| Country |
USA |
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| Platforms (1) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (4)
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| Relations |
| BioProject |
PRJNA544965 |
| SRA |
SRP199584 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE131800_RAW.tar |
58.6 Mb |
(http)(custom) |
TAR (of H5) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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