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Series GSE131240 Query DataSets for GSE131240
Status Public on May 01, 2021
Title Gene expression profiling of mouse embryonic kidney (E12.5) treated with CHIR99021 or DMSO
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Purpose: To investigate GSK3 inhibitor effect on gene expression during renal development. Methods: mRNA profiles of in-vitro organ culture of mouse embryonic kidney (E12.5) treated with 5 µM CHIR99021 or 0.1% DMSO for 72 hours were generated by deep sequencing in quadruplicate. Results: When comparing CHIR99021 group to DMSO group, in 30890 genes tested, 950 genes were upregulated, and 1,879 genes were downregulated, with a fold change ≥2 and p (padj value) <0.05.
 
Overall design mRNA profiles of mouse embryonic kidney (E12.5) treated with 5 µM CHIR99021 (4 samples) or 0.1% DMSO (4 samples) for 72 hours were generated by deep sequencing in quadruplicate
 
Contributor(s) Li Y
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Submission date May 15, 2019
Last update date May 01, 2021
Contact name Yifan Li
E-mail(s) liyifan2005@yahoo.com
Organization name Shenzhen Nanshan People's Hospital and the Affiliated Shenzhen Sixth Hospital of Guangdong Medical University
Department Central Laboratory
Street address No.89 Taoyuan Road, Nanshan District
City Shenzhen
State/province Guangdong
ZIP/Postal code 518052
Country China
 
Platforms (1)
GPL21273 HiSeq X Ten (Mus musculus)
Samples (8)
GSM3767984 DMSO rep1
GSM3767985 DMSO rep2
GSM3767986 DMSO rep3
Relations
BioProject PRJNA543031
SRA SRP198466

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE131240_CHIR99021_DMSO.anno.txt.gz 10.6 Mb (ftp)(http) TXT
GSE131240_fpkm.anno.txt.gz 11.2 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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