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Series GSE131205 Query DataSets for GSE131205
Status Public on Feb 26, 2020
Title RNA-seq on miRNA induced mouse keratinocytes. miR-200b cluster and miR-205.
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Vehicle versus Doxycycline miRNA induction.
Overall design miR-200 cells are K14rtTA/pTRE2-miR-200b cluster
miR-205 cells are K14rtTA/pTRE2-miR-205
For miR-200 induction, samples were sequenced on a Miseq and a Hiseq machine. Counts were then combined at the step of Htseq counts. This gave the most consistent results.
miR-200 experiments were done in duplicate and miR-205 were done in triplicates
Contributor(s) Bjerke G, Yi R
Citation(s) 31900330, 37216502
Submission date May 14, 2019
Last update date Jun 07, 2023
Contact name Glen Bjerke
Organization name University of Colorado
Department MCDB
Lab Yi Lab
Street address 347 UCB
City Boulder
State/province CO
ZIP/Postal code 80301
Country USA
Platforms (2)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (10)
GSM3767570 miR-200 Control 1 - Vehicle
GSM3767571 miR-200 Control 2 - Vehicle
GSM3767572 miR-200 induced with Doxycycline 1
BioProject PRJNA542900
SRA SRP198396

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource 758.0 Kb (ftp)(http) TAB
GSE131205_RAW.tar 960.0 Kb (http)(custom) TAR (of TXT)
GSE131205_miR205NewRNAseqData201810.txt.gz 836.8 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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