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Series GSE130890 Query DataSets for GSE130890
Status Public on Nov 26, 2019
Title Time series transcritpome in wild-type mice and XBP1 liver-specific knockout mice
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We reported the liver transcritpome (taken at 2h interval for a total of 48 hrs) in the liver of wild-type mice and XBP1 liver-specific knockout mice
 
Overall design Liver samples were taken at 2h interval for a total of 48 hours from the liver of wild-type mice and XBP1 liver-specific knockout mice that are kept under constant darkness
 
Contributor(s) Zhu B, Liu S
Citation(s) 31935211
Submission date May 08, 2019
Last update date Feb 25, 2020
Contact name Shuchang Liu
E-mail(s) shl96@pitt.edu
Organization name University of Pittsburgh
Department Pathology
Street address 203 Lothrop Street
City Pittsburgh
State/province PA
ZIP/Postal code 15261
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (96)
GSM3755704 WT CT0 RNA-Seq rep1
GSM3755705 WT CT0 RNA-Seq rep2
GSM3755706 WT CT2 RNA-Seq rep1
Relations
BioProject PRJNA541932
SRA SRP197108

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE130890_RAW.tar 10.6 Gb (http)(custom) TAR (of WIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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