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GEO accession:
Series GSE130884
Query DataSets for GSE130884
Status
Public on Jan 01, 2020
Title
Identification of tissue regulatory T cell precursors in lymphoid organs
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
31924477
,
37901204
Submission date
May 08, 2019
Last update date
Nov 09, 2023
Contact name
Michael Delacher
E-mail(s)
delacher@uni-mainz.de
Phone
+49 6131 17 6574
Organization name
University Medical Center of the Johannes Gutenberg-University Mainz
Department
Institute for Immunology
Lab
Immunology
Street address
Langenbeckstrasse 1
City
Mainz
State/province
Rhineland-Palatinate
ZIP/Postal code
55131
Country
Germany
Platforms (4)
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GPL13112
Illumina HiSeq 2000 (Mus musculus)
GPL19057
Illumina NextSeq 500 (Mus musculus)
GPL21103
Illumina HiSeq 4000 (Mus musculus)
GPL21626
NextSeq 550 (Mus musculus)
Samples (162)
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GSM3754868
Colon_Tconv_1 [ATAC-seq]
GSM3754869
Colon_Tconv_3 [ATAC-seq]
GSM3754870
Colon_Tconv_4 [ATAC-seq]
GSM3754871
Colon_Treg_1 [ATAC-seq]
GSM3754872
Colon_Treg_3 [ATAC-seq]
GSM3754873
Colon_Treg_4 [ATAC-seq]
GSM3754874
Fat_Tconv_1 [ATAC-seq]
GSM3754875
Fat_Tconv_2 [ATAC-seq]
GSM3754876
Fat_Tconv_3 [ATAC-seq]
GSM3754877
Fat_Tconv_4 [ATAC-seq]
GSM3754878
Fat_Treg_1 [ATAC-seq]
GSM3754879
Fat_Treg_2 [ATAC-seq]
GSM3754880
Fat_Treg_3 [ATAC-seq]
GSM3754881
LN_Mem_Treg_1 [ATAC-seq]
GSM3754882
LN_Mem_Treg_2 [ATAC-seq]
GSM3754883
LN_Mem_Treg_3 [ATAC-seq]
GSM3754884
LN_Mem_Treg_4 [ATAC-seq]
GSM3754885
LN_Naive_Treg_1 [ATAC-seq]
GSM3754886
LN_Naive_Treg_2 [ATAC-seq]
GSM3754887
LN_Naive_Treg_3 [ATAC-seq]
GSM3754888
LN_Naive_Treg_4 [ATAC-seq]
GSM3754889
Lung_Tconv_1 [ATAC-seq]
GSM3754890
Lung_Tconv_2 [ATAC-seq]
GSM3754891
Lung_Tconv_3 [ATAC-seq]
GSM3754892
Lung_Tconv_4 [ATAC-seq]
GSM3754893
Lung_Treg_1 [ATAC-seq]
GSM3754894
Lung_Treg_2 [ATAC-seq]
GSM3754895
Lung_Treg_3 [ATAC-seq]
GSM3754896
Lung_Treg_4 [ATAC-seq]
GSM3754897
Skin_Tconv_2_2 [ATAC-seq]
GSM3754898
Skin_Tconv_3_2 [ATAC-seq]
GSM3754899
Skin_Tconv_4dup_2 [ATAC-seq]
GSM3754900
Skin_Treg_2_2 [ATAC-seq]
GSM3754901
Skin_Treg_3_2 [ATAC-seq]
GSM3754902
Skin_Treg_4dup_2 [ATAC-seq]
GSM3754903
Treg_Klrg1-GFP-_1 [ATAC-seq]
GSM3754904
Treg_Klrg1-GFP-_2 [ATAC-seq]
GSM3754905
Treg_Klrg1-GFP-_3 [ATAC-seq]
GSM3754906
Treg_Klrg1-GFP-_4 [ATAC-seq]
GSM3754907
Treg_Klrg1-GFP+_1 [ATAC-seq]
GSM3754908
Treg_Klrg1-GFP+_2 [ATAC-seq]
GSM3754909
Treg_Klrg1-GFP+_3 [ATAC-seq]
GSM3754910
Treg_Klrg1-GFP+_4 [ATAC-seq]
GSM3754911
Treg_Klrg1+GFP+_1 [ATAC-seq]
GSM3754912
Treg_Klrg1+GFP+_2 [ATAC-seq]
GSM3754913
Treg_Klrg1+GFP+_3 [ATAC-seq]
GSM3754914
Treg_Klrg1+GFP+_4 [ATAC-seq]
GSM3754915
Treg_R1_IL-2_BATF-KO [ATAC-seq]
GSM3754916
Treg_R1_IL-4plusIL33_BATF-WT [ATAC-seq]
GSM3754917
Treg_R2_IL-2_BATF-KO [ATAC-seq]
GSM3754918
Treg_R2_IL-2_BATF-WT [ATAC-seq]
GSM3754919
Treg_R2_IL-4plusIL33_BATF-KO [ATAC-seq]
GSM3754920
Treg_R3_IL-2_BATF-KO [ATAC-seq]
GSM3754921
Treg_R3_IL-2_BATF-WT [ATAC-seq]
GSM3754922
Treg_R3_IL-4plusIL33_BATF-KO [ATAC-seq]
GSM3754923
Treg_R3_IL-4plusIL33_BATF-WT [ATAC-seq]
GSM3754924
Treg_R4_IL-4plusIL33_BATF-KO [ATAC-seq]
GSM3754925
Treg_R5_IL-2_BATF-KO [ATAC-seq]
GSM3754926
Treg_R5_IL-2_BATF-WT [ATAC-seq]
GSM3754927
Treg_R5_IL-4plusIL33_BATF-KO [ATAC-seq]
GSM3754928
Treg_R5_IL-4plusIL33_BATF-WT [ATAC-seq]
GSM3754929
Treg_R6_IL-4plusIL33_BATF-WT [ATAC-seq]
GSM3754930
Treg_R7_IL-2_BATF-WT [ATAC-seq]
GSM3755035
tisTregST2_Spleen_R1 [Bulk RNA-seq]
GSM3755036
tisTregST2_Spleen_R2 [Bulk RNA-seq]
GSM3755037
tisTregST2_Spleen_R3 [Bulk RNA-seq]
GSM3755038
tisTregST2_Spleen_R4 [Bulk RNA-seq]
GSM3755039
Klrg1-Il1rl1-Treg_Spleen_R1 [Bulk RNA-seq]
GSM3755040
Klrg1-Il1rl1-Treg_Spleen_R2 [Bulk RNA-seq]
GSM3755041
Klrg1-Il1rl1-Treg_Spleen_R3 [Bulk RNA-seq]
GSM3755042
Klrg1-Il1rl1-Treg_Spleen_R4 [Bulk RNA-seq]
GSM3755043
tisTregST2_BM_R1 [Bulk RNA-seq]
GSM3755044
tisTregST2_BM_R2 [Bulk RNA-seq]
GSM3755045
tisTregST2_BM_R3 [Bulk RNA-seq]
GSM3755046
tisTregST2_BM_R4 [Bulk RNA-seq]
GSM3755047
Klrg1-Il1rl1-Treg_BM_R1 [Bulk RNA-seq]
GSM3755048
Klrg1-Il1rl1-Treg_BM_R2 [Bulk RNA-seq]
GSM3755049
Klrg1-Il1rl1-Treg_BM_R3 [Bulk RNA-seq]
GSM3755050
Klrg1-Il1rl1-Treg_BM_R4 [Bulk RNA-seq]
GSM3755051
tisTregST2_Fat_R1 [Bulk RNA-seq]
GSM3755052
tisTregST2_Fat_R2 [Bulk RNA-seq]
GSM3755053
tisTregST2_Fat_R3 [Bulk RNA-seq]
GSM3755054
tisTregST2_Fat_R4 [Bulk RNA-seq]
GSM3755055
tisTregST2_Skin_R1 [Bulk RNA-seq]
GSM3755056
tisTregST2_Skin_R2 [Bulk RNA-seq]
GSM3755057
tisTregST2_Skin_R3 [Bulk RNA-seq]
GSM3755058
tisTregST2_Skin_R4 [Bulk RNA-seq]
GSM3755059
tisTregST2_Lung_R1 [Bulk RNA-seq]
GSM3755060
tisTregST2_Lung_R2 [Bulk RNA-seq]
GSM3755061
tisTregST2_Lung_R3 [Bulk RNA-seq]
GSM3755062
tisTregST2_Lung_R4 [Bulk RNA-seq]
GSM3755063
tisTregST2_Liver_R1 [Bulk RNA-seq]
GSM3755064
tisTregST2_Liver_R2 [Bulk RNA-seq]
GSM3755065
tisTregST2_Liver_R3 [Bulk RNA-seq]
GSM3755066
tisTregST2_Liver_R4 [Bulk RNA-seq]
GSM3755067
Treg_IL2+4+33_R1.fastq_33644.clean_16757.all_txt [Bulk RNA-seq]
GSM3755068
Treg_IL2+4+33_R2.fastq_33873.clean_16800.all_txt [Bulk RNA-seq]
GSM3755069
Treg_IL2+4+33_R3.fastq_34109.clean_16841.all_txt [Bulk RNA-seq]
GSM3755070
Treg_IL2+4+33_R4.fastq_34372.clean_16881.all_txt [Bulk RNA-seq]
GSM3755071
Treg_IL2_R1.fastq_34451.clean_17145.all_txt [Bulk RNA-seq]
GSM3755072
Treg_IL2_R2.fastq_34500.clean_17189.all_txt [Bulk RNA-seq]
GSM3755073
Treg_IL2_R3.fastq_34568.clean_17228.all_txt [Bulk RNA-seq]
GSM3755074
Treg_IL2_R4.fastq_34620.clean_17279.all_txt [Bulk RNA-seq]
GSM3755075
Treg_IL2+IFNg_R1.fastq_34704.clean_17326.all_txt [Bulk RNA-seq]
GSM3755076
Treg_IL2+IFNg_R2.fastq_34775.clean_17367.all_txt [Bulk RNA-seq]
GSM3755077
Treg_IL2+IFNg_R3.fastq_34858.clean_17407.all_txt [Bulk RNA-seq]
GSM3755078
Treg_IL2+IFNg_R4.fastq_35020.clean_17449.all_txt [Bulk RNA-seq]
GSM3755079
KLRGplusNFIL3plusTreg_R1 [Bulk RNA-seq]
GSM3755080
KLRGplusNFIL3plusTreg_R3 [Bulk RNA-seq]
GSM3755081
KLRGplusNFIL3plusTreg_R4 [Bulk RNA-seq]
GSM3755082
KLRGplusNFIL3plusTreg_R5 [Bulk RNA-seq]
GSM3755083
KLRGminusNFIL3plusTreg_R1 [Bulk RNA-seq]
GSM3755084
KLRGminusNFIL3plusTreg_R3 [Bulk RNA-seq]
GSM3755085
KLRGminusNFIL3plusTreg_R4 [Bulk RNA-seq]
GSM3755086
KLRGminusNFIL3plusTreg_R5 [Bulk RNA-seq]
GSM3755087
KLRGminusNFIL3minusTreg_R1 [Bulk RNA-seq]
GSM3755088
KLRGminusNFIL3minusTreg_R3 [Bulk RNA-seq]
GSM3755089
KLRGminusNFIL3minusTreg_R4 [Bulk RNA-seq]
GSM3755090
KLRGminusNFIL3minusTreg_R5 [Bulk RNA-seq]
GSM3755520
Mouse 1 Spleen Nfil3(GFP)negKlrg1neg Treg
GSM3755521
Mouse 1 Spleen Nfil3(GFP)posKlrg1neg Treg
GSM3755522
Mouse 1 Spleen Nfil3(GFP)posKlrg1pos Treg
GSM3755523
Mouse 1 Skin Nfil3(GFP)posKlrg1pos Treg
GSM3755524
Mouse 1 Fat Nfil3(GFP)posKlrg1pos Treg
GSM3755525
Mouse 1 Colon Nfil3(GFP)posKlrg1pos Treg
GSM3755526
Mouse 2 Spleen Nfil3(GFP)negKlrg1neg Treg
GSM3755527
Mouse 2 Spleen Nfil3(GFP)posKlrg1neg Treg
GSM3755528
Mouse 2 Spleen Nfil3(GFP)posKlrg1pos Treg
GSM3755529
Mouse 2 Skin Nfil3(GFP)posKlrg1pos Treg
GSM3755530
Mouse 2 Fat Nfil3(GFP)posKlrg1pos Treg
GSM3755531
Mouse 2 Colon Nfil3(GFP)posKlrg1pos Treg
GSM3755541
KLRG1_plus_GFP_plus Replicate 1 [scRNA-seq]
GSM3755542
KLRG1_plus_GFP_plus Replicate 2 [scRNA-seq]
GSM3755543
KLRG1_plus_GFP_plus Replicate 3 [scRNA-seq]
GSM3755544
KLRG1_plus_GFP_plus Replicate 4 [scRNA-seq]
GSM3755545
KLRG1_GFP_plus Replicate 1 [scRNA-seq]
GSM3755546
KLRG1_GFP_plus Replicate 2 [scRNA-seq]
GSM3755547
KLRG1_GFP_plus Replicate 3 [scRNA-seq]
GSM3755548
KLRG1_GFP_plus Replicate 4 [scRNA-seq]
GSM3755549
KLRG1_GFP_plus_2 Replicate 1 [scRNA-seq]
GSM3755550
KLRG1_GFP_plus_2 Replicate 2 [scRNA-seq]
GSM3755551
KLRG1_GFP_plus_2 Replicate 3 [scRNA-seq]
GSM3755552
KLRG1_GFP_plus_2 Replicate 4 [scRNA-seq]
GSM3755553
KLRG1_GFP_ Replicate 1 [scRNA-seq]
GSM3755554
KLRG1_GFP_ Replicate 2 [scRNA-seq]
GSM3755555
KLRG1_GFP_ Replicate 3 [scRNA-seq]
GSM3755556
KLRG1_GFP_ Replicate 4 [scRNA-seq]
GSM3755557
2_Spleen_Treg [scRNA-seq]
GSM3755558
4_Fat_Treg [scRNA-seq]
GSM3755559
6_Skin_Treg [scRNA-seq]
GSM3755560
8_Blood_Treg [scRNA-seq]
GSM3755561
10_LN_Treg [scRNA-seq]
GSM3755562
12_BM_Treg [scRNA-seq]
GSM3755563
14_Lung_Treg [scRNA-seq]
GSM3755564
16_Liver_Treg [scRNA-seq]
GSM4029686
Lung_Klrg1-ST2- Treg_1 [ATAC-Seq]
GSM4029687
Lung_Klrg1-ST2- Treg_2 [ATAC-Seq]
GSM4029688
Lung_Klrg1-ST2- Treg_3 [ATAC-Seq]
GSM4029892
Mouse 3 inguinal LN Nfil3(GFP)pos Treg
GSM4029893
Mouse 3 mesenteric LN Nfil3(GFP)pos Treg
GSM4029894
Mouse 3 skin Nfil3(GFP)pos Treg
GSM4029895
Mouse 3 colon Nfil3(GFP)pos Treg
This SuperSeries is composed of the following SubSeries:
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More...
GSE130825
Identification of tissue regulatory T cell precursors in lymphoid organs [ATAC-Seq]
GSE130842
Identification of tissue regulatory T cell precursors in lymphoid organs [bulk RNA-Seq]
GSE130875
Identification of tissue regulatory T cell precursors in lymphoid organs [scTCR-seq]
GSE130879
Identification of tissue regulatory T cell precursors in lymphoid organs [scRNA]
Relations
BioProject
PRJNA541901
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE130884_RAW.tar
18.7 Gb
(http)
(custom)
TAR (of BED, BIGWIG, H5, MTX, TSV)
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