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Series GSE130446 Query DataSets for GSE130446
Status Public on Apr 30, 2019
Title Effector TH17 cells give rise to long-lived TRM cells that are essential for an immediate response against bacterial infection
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Mucosal barrier surfaces serve as the critical first line of defense separating our bodies from the plethora of pathogenic microorganisms that inhabit our environment. Adaptive immunity provides life-long protection through the generation of a central and effector memory T-cell pool, memory B cells and the recently described population of tissue resident memory cells (TRM). The cellular origin of TRM CD4 cells is unknown and the contribution of this CD4 memory population to host defense still remains elusive. By using IL-17A tracking-fate-mouse models we found that a significant fraction of the CD4 TRM cells derive from IL-17A producing effector (TH17) cells following primary immunization. Maintenance of these resting exTH17 TRM cells is mediated by IL-7, produced by lymphatic endothelial cells. During a memory response, we show that neither antibodies, nor gd T cells, nor circulatory memory T cells are sufficient for the rapid host defense required to eliminate the pathogen. Using parabiosis and depletion studies, we demonstrated that CD4 exTH17 TRM cells play an important role in respiratory defense and bacterial clearance. Upon infection, exTH17 TRM cells rapidly produce IL-17A and IFN-γ to promote neutrophil infiltration and bacterial clearance. These studies delineate the origin, function and importance of airway CD4 TRM cells during bacterial infection, offering novel strategies for targeted vaccine design, which is especially imperative for those pathogens that are resistant to antibiotic treatment.
 
Overall design We profiled the transcriptome of draining lymph node (LN) naïve CD4 T cells (2 replicates), memory CD4 T cells (2 replicates) and the 3 populations of TRM cells present in the lung 35 days after immunization with heat-killed Klebsiella pneumoniae (TH17, exTH17 (3 replicates) and YFPneg (2 replicates)).
 
Contributor(s) Amezcua Vesely MC, Pallis P, Bielecki P, Siong Low J, Zhao J, Harman CC, Kroehling L, Jackson R, Bailis W, Licona-Limon P, Xu H, Iijima N, Pillai PS, Kaplan D, Weaver C, Kluger Y, Kowalczyk MS, Iwasaki A, Pereira J, Esplugues E, Gagliani N, Flavell RA
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Submission date Apr 29, 2019
Last update date Apr 30, 2019
Contact name Christian Harman
Organization name Yale University
Department Genetics/Immunobiology
Lab Flavell Lab
Street address 300 Cedar Street, The Anlyan Center
City New Haven
State/province Connecticut
ZIP/Postal code 06520
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (10)
GSM3738768 Lung_exTh17_1
GSM3738769 LN_Memory_1
GSM3738770 Lung_YFP_Negative_1
Relations
BioProject PRJNA540274
SRA SRP194159

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE130446_Gene_Expression_Mca34.txt.gz 1.5 Mb (ftp)(http) TXT
GSE130446_Mus_Musculus_GRCm38_genes.gtf.gz 18.7 Mb (ftp)(http) GTF
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Raw data are available in SRA
Processed data are available on Series record

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