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Series GSE129961 Query DataSets for GSE129961
Status Public on Jul 08, 2020
Title Analysis of lncRNAs in macrophages
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We identified long noncoding RNAs (lncRNAs) expressed in macrophages and characterized one lncRNA, designated lncFAO. To analyze the function of lncFAO, effects of knockdown and knockout of lncFAO were analyzed by RNA-seq.
 
Overall design [1] RNA-seq profiling of effects of the knockdown and deletion of lncFAO. [2] RNA-seq profiling of time-course effects of deletion of lncFAO.
 
Contributor(s) Manabe I, Nakayama Y
Citation(s) 32513690
Submission date Apr 17, 2019
Last update date Jul 08, 2020
Contact name Ichiro Manabe
E-mail(s) manabe-tky@umin.ac.jp
Organization name Chiba University
Street address 1-8-1 Inohana, Chuo
City Chiba
ZIP/Postal code 260-8670
Country Japan
 
Platforms (2)
GPL11002 Illumina Genome Analyzer IIx (Mus musculus)
GPL18480 Illumina HiSeq 1500 (Mus musculus)
Samples (39)
GSM3728650 BMDM_LPS0h
GSM3728651 BMDM_LPS4h
GSM3728652 BMDM_LPS12h
This SubSeries is part of SuperSeries:
GSE130056 Analysis of long noncoding RNAs in macrophages
Relations
BioProject PRJNA533296
SRA SRP192861

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE129961_RAW.tar 2.8 Gb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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