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Series GSE129902 Query DataSets for GSE129902
Status Public on May 21, 2019
Title The landscape of transcription initiation across latent and lytic KSHV genomes
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Precise promoter annotation is required for understanding the mechanistic basis of transcription initiation. Here we use RAMPAGE to profile genome wide KSHV transcription initiation events, which will provide basis for further virus transcripts expression studies.
Overall design We performed RAMPAGE in iSLK.219 and TREx-BCBL1-RTA cell lines, samples were taken at latency and dox induced lytic activation for 12h, 24h, 48h, 72h and 96h.
Contributor(s) Ye X, Zhao Y, Karijolich J
Citation(s) 31188901
Submission date Apr 16, 2019
Last update date Jul 16, 2019
Contact name Jeff Rathmell
Organization name Vanderbilt University Medical Center
Department PMI
Lab Jeff Rathmell Lab
Street address 1211 Medical Center Drive
City Nashville
State/province TN
ZIP/Postal code 37232
Country USA
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (24)
GSM3724852 iSLK_latency_rep1
GSM3724853 iSLK_latency_rep2
GSM3724854 iSLK_h12_rep1
BioProject PRJNA533118
SRA SRP192756

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Supplementary file Size Download File type/resource
GSE129902_BCBL1_clusters_counts.csv.gz 1.1 Mb (ftp)(http) CSV
GSE129902_iSLK219_clusters_counts.csv.gz 906.1 Kb (ftp)(http) CSV
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Processed data are available on Series record

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