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Series GSE129823 Query DataSets for GSE129823
Status Public on Sep 25, 2020
Title RNA-seq for MDCKII 3D and 2D epithelial morphogenesis.
Organism Canis lupus familiaris
Experiment type Expression profiling by high throughput sequencing
Summary We performed time-course RNA-seq experiments for MDCKII 3D cell culture, and included seeding day0 cells and over-confluent 2D cells. To study how intracellular trafficking affects transcriptome changes, we also profiled trancriptome of DENND5A and AVL9 KD MDCKII cells by RNA-seq.
Overall design Examination of mRNA expression during epithelial morphogenesis in MDCKII cells.
Contributor(s) Zhao S, Wang T
Citation(s) 33089114
Submission date Apr 15, 2019
Last update date Oct 27, 2020
Contact name Shaying Zhao
Organization name University of Georgia
Lab Shaying Zhao
Street address B304B Life Sciences, 120 Green Street
State/province GA
ZIP/Postal code 30602
Country USA
Platforms (2)
GPL20988 Illumina HiSeq 2500 (Canis lupus familiaris)
GPL21400 Illumina NextSeq 500 (Canis lupus familiaris)
Samples (29)
GSM3722649 MDCKII D0-1 RNA-seq
GSM3722650 MDCKII D0-2 RNA-seq
GSM3722651 MDCKII D0-3 RNA-seq
This SubSeries is part of SuperSeries:
GSE129824 ATAC-seq and RNA-seq for MDCKII 3D and 2D epithelial morphogenesis
BioProject PRJNA532909
SRA SRP192602

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE129823_RAW.tar 5.7 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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