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Series GSE129723 Query DataSets for GSE129723
Status Public on Apr 13, 2019
Title Ketogenesis-generated β-hydroxybutyrate is an epigenetic regulator of CD8+ T cell memory development
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Elucidation of metabolic flux and switch is fundamental for understanding of CD8+ memory T (Tm) cell development. Glycogen, an intracellular carbon reservoir, has long been functionally considered as the use of energy metabolism. However, our recent study indicated that glycogen metabolism, directed by a cytosolic phosphoenolpyruvate carboxykinase (Pck1), controls the formation and maintenance of CD8+ Tm cells through regulating the redox homeostasis1. This unusual metabolic program raises the question of how Pck1 is upregulated in CD8+ Tm cells. Here, we show that mitochondrial acetyl-CoA is shunted to ketogenesis, which indirectly regulates Pck1 expression. Mechanistically, ketogenesis-derived β-hydroxybutyrate (BHB) is stocked in CD8+ Tm cells, which epigenetically modifies H3K9 of FoxO1 and PGC-1α with β-hydroxybutyrylation so to upregulate these genes expression. As a result, FoxO1 and PGC-1α cooperatively upregulates Pck1 expression, thus directing the carbon flow along the gluconeogenic pathway to glycogen and the pentose phosphate pathway. These results unveil that the ketogenesis acts as an unusual metabolic pathway in CD8+ Tm cells, linking epigenetic modification required for memory development.
Overall design H3K9bhb CHIP-seq done in CD8+ Tm cells treated with BHB
Contributor(s) Zhang H, Zhou L, Lv J, Liu J
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Submission date Apr 12, 2019
Last update date Apr 14, 2019
Contact name Bo Huang
Phone 010-69156464
Organization name Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences
Department Immunology
Street address #5 Dong Dan San Tiao
City Beijing
ZIP/Postal code 100730
Country China
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (2)
GSM3720844 H3K9bhb-ChIPseq
GSM3720845 input DNA
BioProject PRJNA532591
SRA SRP192360

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Supplementary file Size Download File type/resource
GSE129723_RAW.tar 40.0 Kb (http)(custom) TAR (of BED)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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