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| Status |
Public on Oct 29, 2019 |
| Title |
Identification of N6-methyladenosine functions of YTHDF3 using MeRIP-seq analysis combined with transcription sequencing |
| Organism |
Homo sapiens |
| Experiment type |
Other
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| Summary |
We performed methylated RNA immunoprecipitation followed by sequencing (MeRIP–seq) combined with transcription sequencing to clarify the mechanism underlined YTHDF3 in CRC
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| Overall design |
More than 50 ug of total RNA is sufficient for followed RNA fragmentation and immunoprecipitation according to the manuscript of the Magna MeRIP™ m6A Kit (Merck, Darmstadt, Germany).
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| Contributor(s) |
Ni W, Yao S, Li J |
| Citation(s) |
31619268 |
| Submission date |
Apr 12, 2019 |
| Last update date |
Oct 29, 2019 |
| Contact name |
Wen Ni |
| E-mail(s) |
wenni_2007@126.com
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| Phone |
+86-20-84112828
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| Organization name |
SUN YAT-SEN UNIVERSITY
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| Street address |
No. 135, Xingang Xi Road
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| City |
Guangzhou |
| State/province |
Guangdong |
| ZIP/Postal code |
510275 |
| Country |
China |
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| Platforms (1) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (8)
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| Relations |
| BioProject |
PRJNA532587 |
| SRA |
SRP192357 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE129716_TreatVSNC_diffPeak_result-PROCESSING_DATA.xlsx |
39.1 Kb |
(ftp)(http) |
XLSX |
| GSE129716_Treat_inputVSNC_input_Transcript_differential_expression-PROCESSING_DATA.xlsx |
27.5 Mb |
(ftp)(http) |
XLSX |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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