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Series GSE129716 Query DataSets for GSE129716
Status Public on Oct 29, 2019
Title Identification of N6-methyladenosine functions of YTHDF3 using MeRIP-seq analysis combined with transcription sequencing
Organism Homo sapiens
Experiment type Other
Summary We performed methylated RNA immunoprecipitation followed by sequencing (MeRIP–seq) combined with transcription sequencing to clarify the mechanism underlined YTHDF3 in CRC
Overall design More than 50 ug of total RNA is sufficient for followed RNA fragmentation and immunoprecipitation according to the manuscript of the Magna MeRIP™ m6A Kit (Merck, Darmstadt, Germany).
Contributor(s) Ni W, Yao S, Li J
Citation(s) 31619268
Submission date Apr 12, 2019
Last update date Oct 29, 2019
Contact name Wen Ni
Phone +86-20-84112828
Organization name SUN YAT-SEN UNIVERSITY
Street address No. 135, Xingang Xi Road
City Guangzhou
State/province Guangdong
ZIP/Postal code 510275
Country China
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (8)
GSM3720795 NC-1_input
GSM3720796 NC-1_IP
GSM3720797 NC-2_input
BioProject PRJNA532587
SRA SRP192357

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Supplementary file Size Download File type/resource
GSE129716_TreatVSNC_diffPeak_result-PROCESSING_DATA.xlsx 39.1 Kb (ftp)(http) XLSX
GSE129716_Treat_inputVSNC_input_Transcript_differential_expression-PROCESSING_DATA.xlsx 27.5 Mb (ftp)(http) XLSX
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Processed data are available on Series record

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