|
| Status |
Public on Apr 12, 2019 |
| Title |
ChIP-seq of histone marks H3K36, H3K27, and H3K9 in JMJD1C knockout or mutated MLL-AF9 leukemia cells |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
We performed genome-wide profiling of H3K9me3, H3K9me1, H3K27me3, and H3K36me3 by ChIP-seq in JMJD1C knockout or mutated MLL-AF9 leukemia cells. For ChIP-seq in JMJD1C mutated cells, we transduced sgRNA targeting the zinc finger, jumonji domain of JMJD1C or Renilla control and sorted on day 6 for GFP (MLL-AF9) Tdtomato (sgRNA) double positive cells. For ChIP-seq in JMJD1C knockout cells, we transduced Jmjd1c flox/flox MLL-AF9 leukemia cells with CRE TdTomato and sorted on day 6 for GFP (MLL-AF9) Tdtomato (CRE) double positive cells. These cells were subjected to ChIP-seq analysis with either H3K27me3, H3K9me3, H3K9me1 (JMJD1C knockout cells) or H3K36me3 (both knockout and mutated cells) antibody. We found increased H3K36me3 level at promoters of differentially expressed genes between control and JMJD1C loss or mutated leukemia cells.
|
| |
|
| Overall design |
We performed ChIP-seq in mouse MLL-AF9 cells harboring JMJD1C sgRNA targeting zinc finger, jumonji domain or renilla control sgRNAs.
|
| |
|
| Contributor(s) |
Burns R, Christiansen L, Izaguirre-Carbonell J |
| Citation(s) |
31076406 |
| |
| Submission date |
Apr 11, 2019 |
| Last update date |
Mar 08, 2022 |
| Contact name |
Nan Zhu |
| E-mail(s) |
nan.zhu@versiti.org
|
| Organization name |
Versiti Blood Research Institute Milwaukee
|
| Street address |
8733 W Watertown Plank Rd
|
| City |
Milwaukee |
| State/province |
WI |
| ZIP/Postal code |
53226 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
|
| Samples (34)
|
|
| This SubSeries is part of SuperSeries: |
| GSE129675 |
Critical Role of Jumonji Domain of JMJD1C in MLL-rearranged leukemia |
|
| Relations |
| BioProject |
PRJNA532408 |
| SRA |
SRP192073 |
Less...
More...