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Series GSE129328 Query DataSets for GSE129328
Status Public on Jul 15, 2019
Title CoBATCH for high-throughput single-cell epigenomic profiling [native ESC coBATCH]
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary we develop a robut low input cell and high throughput single cell ChIP method used for both native and fixed in vitro cultured cells and intact tissue
 
Overall design we fused Protein A to the N-terminal of Tn5 to generated Protein A-Tn5 fusion enzyme, the ProteinA-Tn5-complex is enriched through specific antibodies to genomic regions and Tn5 generates indexed chromatin fragments ready for the library preparation and sequencing
 
Contributor(s) Wang Q, Xiong H, Ai S, Yu X, Liu Y, Zhang J, He A
Citation(s) 31471188
Submission date Apr 04, 2019
Last update date Oct 15, 2019
Contact name Haiqing Xiong
E-mail(s) haiqingxiong@pku.edu.cn
Organization name Peking University
Street address 5 Yiheyuan Road, Haidian District
City Beijing
State/province Beijing
ZIP/Postal code 100871
Country China
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (2161)
GSM3708312 H3K27ac_native_ESC_cell_1
GSM3708313 H3K27ac_native_ESC_cell_2
GSM3708314 H3K27ac_native_ESC_cell_3
This SubSeries is part of SuperSeries:
GSE129335 CoBATCH for high-throughput single-cell epigenomic profiling
Relations
BioProject PRJNA531008
SRA SRP190913

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE129328_RAW.tar 374.0 Mb (http)(custom) TAR (of BED)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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