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Series GSE129040 Query DataSets for GSE129040
Status Public on Oct 31, 2019
Title ATAC-seq studies to open chromatin acessible region of AD brain samples
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We performed the ATAC-seq to brain tissue from prefrontal cortex region in 6 AD Postmortem samples and 6 control non-dementia postmortem samples.
Overall design 6 AD sample and 6 normal samples
Contributor(s) Meng G
Citation(s) 36693875
Submission date Mar 29, 2019
Last update date Feb 07, 2023
Contact name Guofeng Meng
Phone 0862161590480
Organization name Shanghai University of Traditional Chinese Medicine
Street address Jinke 3528
City Shanghai
ZIP/Postal code 20000
Country China
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (12)
GSM3692184 aD11 (ATAC-Seq)
GSM3692185 aD16 (ATAC-Seq)
GSM3692186 aD18 (ATAC-Seq)
This SubSeries is part of SuperSeries:
GSE129041 Transcriptional regulation loss disturbs the brain function and indicates detrimental clinical outcomes of Alzheimer's disease
BioProject PRJNA529859
SRA SRP189866

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE129040_RAW.tar 7.8 Mb (http)(custom) TAR (of BROADPEAK)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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