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Series GSE129039 Query DataSets for GSE129039
Status Public on Oct 31, 2019
Title ChIP-seq studies to ATF4, OLIG2, THRA binding sites of AD brain samples
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We performed the Chip-seq to brain tissues from prefrontal cortex region in AD Postmortem samples and non-dementia control postmortem samples.
Overall design The binding sites of three TFs were studied in 6 AD sample and 6 normal samples were studied, respectively. The used antibodies include: (1) ATF4, CTS,11815S (lot#4); (2) Olig2, RnD, AF2418 (lot#UPA0718031); (3) THRA, SantaCruz, SC-56873 ((lot#J1614)
Contributor(s) Meng G
Citation(s) 36693875
Submission date Mar 29, 2019
Last update date Feb 07, 2023
Contact name Guofeng Meng
Phone 0862161590480
Organization name Shanghai University of Traditional Chinese Medicine
Street address Jinke 3528
City Shanghai
ZIP/Postal code 20000
Country China
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (35)
GSM3692149 20134-atf4 (ChIP-seq)
GSM3692150 20138-atf4 (ChIP-seq)
GSM3692151 2016018-atf4 (ChIP-seq)
This SubSeries is part of SuperSeries:
GSE129041 Transcriptional regulation loss disturbs the brain function and indicates detrimental clinical outcomes of Alzheimer's disease
BioProject PRJNA529854
SRA SRP189868

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE129039_RAW.tar 4.8 Mb (http)(custom) TAR (of NARROWPEAK)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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