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GEO accession:
Series GSE128837
Query DataSets for GSE128837
Status
Public on Nov 17, 2019
Title
The hematopoietic master transcription factor PU.1 requires its interaction with the SWI/SNF remodeler to access chromatin de novo
Organism
Homo sapiens
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
31964861
Submission date
Mar 25, 2019
Last update date
Jan 27, 2020
Contact name
Michael Rehli
E-mail(s)
michael.rehli@klinik.uni-r.de
Organization name
University Hospital Regensburg
Department
Internal Med III
Street address
F.-J.-Strauss-Allee 11
City
Regensburg
ZIP/Postal code
93042
Country
Germany
Platforms (4)
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GPL9052
Illumina Genome Analyzer (Homo sapiens)
GPL15433
Illumina HiSeq 1000 (Homo sapiens)
GPL21290
Illumina HiSeq 3000 (Homo sapiens)
GPL21697
NextSeq 550 (Homo sapiens)
Samples (179)
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GSM3686898
CTV1_PU1_1
GSM3686899
CTV1_PU1_2
GSM3686900
CTV1_PU1_3
GSM3686901
CTV1_PU1_4
GSM3686902
CTV1_PU1_5
GSM3686903
CTV1_PU1mut_1
GSM3686904
CTV1_PU1mut_2
GSM3686905
CTV1_PU1mut_3
GSM3686906
CTV1_PU1mut_4
GSM3686907
CTV1_PU1mut_5
GSM3686908
CTV1_PU1_delA_4
GSM3686909
CTV1_PU1_delA_5
GSM3686910
TALL1_PU1_1
GSM3686911
TALL1_PU1_2
GSM3686912
TALL1_PU1mut_1
GSM3686913
TALL1_PU1mut_2
GSM3686914
HEPG2_PU1_1
GSM3686915
HEPG2_PU1_2
GSM3686916
HEPG2_PU1mut_1
GSM3686917
HEPG2_PU1mut_2
GSM3686918
BC_PU.1-ChIP_donorA
GSM3686919
BC_PU.1-ChIP_donorC
GSM3686920
cMO_PU.1-ChIP_donorA
GSM3686921
cMO_PU.1-ChIP_donorD
GSM3686922
ncMO_PU.1-ChIP_donorA
GSM3686923
ncMO_PU.1-ChIP_donorD
GSM3686924
NEU_PU.1-ChIP_donorE
GSM3686925
NEU_Input-ChIP_donorE
GSM3686926
NEU_PU.1-ChIP_donorF
GSM3686927
NEU_Input-ChIP_donorF
GSM3686928
BDMC_PU.1-ChIP_donorG
GSM3686929
BDMC_Input-ChIP_donorG
GSM3686930
BDMC_PU.1-ChIP_donorH
GSM3686931
BDMC_Input-ChIP_donorH
GSM3686932
MO_PU.1-ChIP_donorI
GSM3686933
MO_PU.1-ChIP_donorK
GSM3686934
MO_PU.1-ChIP_donorO
GSM3686935
DC18h_PU.1-ChIP_donorI
GSM3686936
DC18h_Input-ChIP_donorI
GSM3686937
DC18h_PU.1-ChIP_donorK
GSM3686938
DC18h_Input-ChIP_donorK
GSM3686939
DC27h_PU.1-ChIP_donorK
GSM3686940
DC42h_PU.1-ChIP_donorI
GSM3686941
DC42h_PU.1-ChIP_donorK
GSM3686942
DC66h_PU.1-ChIP_donorI
GSM3686943
DC96h_PU.1-ChIP_donorL
GSM3686944
DC96h_FLAG-ChIP_donorL
GSM3686945
DC96h_PU.1-ChIP_donorM
GSM3686946
DC96h_FLAG-ChIP_donorM
GSM3686947
DC7d_PU.1-ChIP_donorI
GSM3686948
DC7d_PU.1-ChIP_donorK
GSM3686949
MO4h_PU.1-ChIP_donorO
GSM3686950
MO4hLPS_PU.1-ChIP_donorO
GSM3686951
MO18h_PU.1-ChIP_donorO
GSM3686952
MO18h_Input-ChIP_donorO
GSM3686953
MAC7d_PU.1-ChIP_donorO
GSM3686954
MAC7d_PU.1-ChIP_donorN
GSM3686955
MAC7d_PU.1-ChIP_donorP
GSM3686956
MAC7d_Input-ChIP_donorP
GSM3686957
EM-3_PU.1-ChIP
GSM3686958
EM-3_gDNA-ChIP
GSM3686959
ML-2_PU.1-ChIP
GSM3686960
ML-2_gDNA-ChIP
GSM3686961
KG-1_PU.1-ChIP
GSM3686962
KG-1_gDNA-ChIP
GSM3686963
NB-4_PU.1-ChIP
GSM3686964
NB-4_gDNA-ChIP
GSM3686965
U-937_PU.1-ChIP
GSM3686966
U-937_gDNA-ChIP
GSM3686967
THP-1_PU.1-ChIP
GSM3686968
THP-1_Input-ChIP
GSM3686969
THP-1_gDNA-ChIP
GSM3686970
THP-1-PMAVD3_PU.1-ChIP
GSM3686971
THP-1-PMAVD3_Input-ChIP
GSM3686972
K-562_gDNA-ChIP
GSM3686973
CTV-1_PU.1mRNA_FA_FLAG-ChIP_1
GSM3686974
CTV-1_PU.1mRNA_FA_FLAG-ChIP_2
GSM3686975
CTV-1_PU.1mRNA_FA_FLAG-ChIP_3
GSM3686976
CTV-1_PU.1mRNA_FA_FLAG-ChIP_4
GSM3686977
CTV-1_PU.1mRNA_FA_FLAG-ChIP_5
GSM3686978
CTV-1_PU.1mRNA_FA_PU.1-ChIP_1
GSM3686979
CTV-1_PU.1mRNA_FA_PU.1-ChIP_2
GSM3686980
CTV-1_PU.1mRNA_FA_PU.1-ChIP_3
GSM3686981
CTV-1_PU.1mRNA_FA_H3K27ac-ChIP_1
GSM3686982
CTV-1_PU.1mRNA_FA_H3K27ac-ChIP_2
GSM3686983
CTV-1_PU.1mRNA_FA_H3K27ac-ChIP_3
GSM3686984
CTV-1_PU.1mRNA_FA_FLAG-ChIP_6
GSM3686985
CTV-1_PU.1mRNA_FA_FLAG-ChIP_50perc_6
GSM3686986
CTV-1_PU.1mRNA_FA_FLAG-ChIP_15perc_6
GSM3686987
CTV-1_PU.1mRNA_FA_FLAG-ChIP_DMSO_7
GSM3686988
CTV-1_PU.1mRNA_FA_FLAG-ChIP_PFI3_1uM_7
GSM3686989
CTV-1_PU.1mRNA_FA_FLAG-ChIP_PFI3_5uM_7
GSM3686990
CTV-1_PU.1mRNA_FA_FLAG-ChIP_PFI3_10uM_7
GSM3686991
CTV-1_PU.1mRNA_FA_DMSO_ChIP-Input_7
GSM3686992
CTV-1_PU.1mRNA_DSG_FA_ETS1-ChIP_8
GSM3686993
CTV-1_PU.1mRNA_DSG_FA_ETS1-ChIP_9
GSM3686994
CTV-1_PU.1mRNA_DSG_FA_FLI1-ChIP_8
GSM3686995
CTV-1_PU.1mRNA_DSG_FA_FLI1-ChIP_9
GSM3686996
CTV-1_PU.1mRNA_DSG_FA_BRG1-ChIP_4
GSM3686997
CTV-1_PU.1mRNA_DSG_FA_BRG1-ChIP_5
GSM3686998
CTV-1_PU.1mRNA_DSG_FA_Input-ChIP_5
GSM3686999
CTV-1_mutPU.1mRNA_FA_FLAG-ChIP_1
GSM3687000
CTV-1_mutPU.1mRNA_FA_FLAG-ChIP_2
GSM3687001
CTV-1_mutPU.1mRNA_FA_FLAG-ChIP_3
GSM3687002
CTV-1_mutPU.1mRNA_FA_FLAG-ChIP_4
GSM3687003
CTV-1_mutPU.1mRNA_FA_FLAG-ChIP_5
GSM3687004
CTV-1_mutPU.1mRNA_FA_PU.1-ChIP_1
GSM3687005
CTV-1_mutPU.1mRNA_FA_PU.1-ChIP_2
GSM3687006
CTV-1_mutPU.1mRNA_FA_PU.1-ChIP_3
GSM3687007
CTV-1_mutPU.1mRNA_FA_H3K27ac-ChIP_1
GSM3687008
CTV-1_mutPU.1mRNA_FA_H3K27ac-ChIP_2
GSM3687009
CTV-1_mutPU.1mRNA_FA_H3K27ac-ChIP_3
GSM3687010
CTV-1_mutPU.1mRNA_FA_Input-ChIP_1
GSM3687011
CTV-1_mutPU.1mRNA_DSG_FA_ETS1-ChIP_8
GSM3687012
CTV-1_mutPU.1mRNA_DSG_FA_ETS1-ChIP_9
GSM3687013
CTV-1_mutPU.1mRNA_DSG_FA_FLI1-ChIP_8
GSM3687014
CTV-1_mutPU.1mRNA_DSG_FA_FLI1-ChIP_9
GSM3687015
CTV-1_mutPU.1mRNA_DSG_FA_BRG1-ChIP_4
GSM3687016
CTV-1_mutPU.1mRNA_DSG_FA_BRG1-ChIP_5
GSM3687017
CTV-1_mutPU.1mRNA_DSG_FA_Input-ChIP_5
GSM3687018
CTV-1_PU.1-delPmRNA_FA_FLAG-ChIP_1
GSM3687019
CTV-1_PU.1-delPmRNA_FA_FLAG-ChIP_2
GSM3687020
CTV-1_PU.1-delQmRNA_FA_FLAG-ChIP_1
GSM3687021
CTV-1_PU.1-delQmRNA_FA_FLAG-ChIP_2
GSM3687022
CTV-1_PU.1-delAQPmRNA_FA_FLAG-ChIP_1
GSM3687023
CTV-1_PU.1-delAQPmRNA_FA_FLAG-ChIP_2
GSM3687024
CTV-1_PU.1-delAmRNA_FA_FLAG-ChIP_1
GSM3687025
CTV-1_PU.1-delAmRNA_FA_FLAG-ChIP_2
GSM3687026
CTV-1_PU.1-delAmRNA_FA_FLAG-ChIP_4
GSM3687027
CTV-1_PU.1-delAmRNA_FA_FLAG-ChIP_5
GSM3687028
CTV-1_PU.1-delAmRNA_DSG_FA_BRG1-ChIP_4
GSM3687029
CTV-1_PU.1-delAmRNA_DSG_FA_BRG1-ChIP_5
GSM3687030
CTV-1_gDNA
GSM3687031
CTV-1_mock_FA_FLAG-ChIP_1
GSM3687032
CTV-1_PU.1-BirAmRNA_FA_PU.1-ChIP_10
GSM3687033
CTV-1_PU.1-delQ-BirAmRNA_FA_PU.1-ChIP_10
GSM3687034
CTV-1_PU.1-delA-BirAmRNA_FA_PU.1-ChIP_10
GSM3687035
TALL1_PU.1mRNA_FA_FLAG-ChIP_1
GSM3687036
TALL1_PU.1mRNA_FA_FLAG-ChIP_2
GSM3687037
TALL1_mutPU.1mRNA_FA_FLAG-ChIP_1
GSM3687038
TALL1_mutPU.1mRNA_FA_FLAG-ChIP_2
GSM3687039
TALL1_gDNA
GSM3687040
HepG2_PU.1mRNA_FA_FLAG-ChIP_1
GSM3687041
HepG2_PU.1mRNA_FA_FLAG-ChIP_2
GSM3687042
HepG2_mutPU.1mRNA_FA_FLAG-ChIP_1
GSM3687043
HepG2_mutPU.1mRNA_FA_FLAG-ChIP_2
GSM3687044
HepG2_gDNA
GSM3687045
CTV1-RNA_PU1_1
GSM3687046
CTV1-RNA_PU1_2
GSM3687047
CTV1-RNA_PU1mut_1
GSM3687048
CTV1-RNA_PU1mut_2
GSM3687049
CTV1-RNA_woPU1_1
GSM3687050
CTV1-RNA_woPU1_2
GSM3687051
CTV1-RNA_PU1_rep_3
GSM3687052
CTV1-RNA_PU1mut_rep_3
GSM4116432
CTV1_PU1_6
GSM4116433
CTV1_PU1_7
GSM4116434
CTV1_PU1mut_6
GSM4116435
CTV1_PU1mut_7
GSM4116436
CTV1_PU1_delQ_6
GSM4116437
CTV1_PU1_delQ_7
GSM4116438
CTV1_PU1_delA_6
GSM4116439
CTV1_PU1_delA_7
GSM4116546
CTV-1_PU.1-delAmRNA_DSG_FA_BRG1-ChIP_11
GSM4116547
CTV-1_PU.1-delAmRNA_DSG_FA_BRG1-ChIP_12
GSM4116548
CTV-1_PU.1-delAmRNA_FA_FLAG-ChIP_11
GSM4116549
CTV-1_PU.1-delAmRNA_FA_FLAG-ChIP_12
GSM4116550
CTV-1_PU.1-delQmRNA_DSG_FA_BRG1-ChIP_11
GSM4116551
CTV-1_PU.1-delQmRNA_DSG_FA_BRG1-ChIP_12
GSM4116552
CTV-1_PU.1-delQmRNA_FA_FLAG-ChIP_11
GSM4116553
CTV-1_PU.1-delQmRNA_FA_FLAG-ChIP_12
GSM4116554
CTV-1_PU.1mRNA_DSG_FA_BRG1-ChIP_11
GSM4116555
CTV-1_PU.1mRNA_DSG_FA_BRG1-ChIP_12
GSM4116556
CTV-1_PU.1mRNA_FA_FLAG-ChIP_11
GSM4116557
CTV-1_PU.1mRNA_FA_FLAG-ChIP_12
GSM4116558
CTV-1_mutPU.1mRNA_DSG_FA_BRG1-ChIP_11
GSM4116559
CTV-1_mutPU.1mRNA_DSG_FA_BRG1-ChIP_12
GSM4116560
CTV-1_mutPU.1mRNA_FA_FLAG-ChIP_11
GSM4116561
CTV-1_mutPU.1mRNA_FA_FLAG-ChIP_12
This SuperSeries is composed of the following SubSeries:
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More...
GSE128833
The hematopoietic master transcription factor PU.1 requires its interaction with the SWI/SNF remodeler to access chromatin de novo [ATAC-seq]
GSE128834
The hematopoietic master transcription factor PU.1 requires its interaction with the SWI/SNF remodeler to access chromatin de novo [ChIP-seq]
GSE128835
The hematopoietic master transcription factor PU.1 requires its interaction with the SWI/SNF remodeler to access chromatin de novo [CTV1_TALL_HELP ChIP-seq]
GSE128836
The hematopoietic master transcription factor PU.1 requires its interaction with the SWI/SNF remodeler to access chromatin de novo [RNA-seq]
Relations
BioProject
PRJNA528987
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE128837_RAW.tar
85.2 Gb
(http)
(custom)
TAR (of BED, BIGWIG, TXT)
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