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Series GSE128526 Query DataSets for GSE128526
Status Public on May 08, 2019
Title Aberrant expression of select piRNA-pathway genes does not reactivate piRNA silencing in cancer cells
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Summary Analysis of PIWIL1 function in COLO205 [ATCC® CCL-222] colon adenocarcinoma cancer cell culture model.
Overall design Total Small RNAs and small RNAs co-immunoprecipitated with PIWIL1 from COLO205 cells were analyzed for piRNA signatures. Total RNA sequencing from PIWIL1 short hairpin knock-downs and CRISPR-generated knockouts were used for differential gene and transposon expression.
Contributor(s) Genzor P, Cordts SC, Bokil NV, Haase AD
Citation(s) 31110013
Submission date Mar 19, 2019
Last update date Jun 24, 2019
Contact name Pavol Genzor
Organization name Henry M Jackson Foundation
Department ACESO
Street address 6720A Rockledge Drive, Suite 100
City Bethesda
State/province MD
ZIP/Postal code 20817
Country USA
Platforms (3)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
GPL21290 Illumina HiSeq 3000 (Homo sapiens)
Samples (32)
GSM3678967 COLO205_PIWIL1_WT_1
GSM3678968 COLO205_PIWIL1_WT_2
GSM3678969 COLO205_PIWIL1_WT_3
BioProject PRJNA528177
SRA SRP188921

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE128526_GeneQuantitationTPM.xlsx.gz 9.2 Mb (ftp)(http) XLSX
GSE128526_RIP_SizeDistributionAllData.xlsx.gz 10.5 Kb (ftp)(http) XLSX
GSE128526_ReadAnnotationNormCOUNTS.xlsx.gz 8.5 Kb (ftp)(http) XLSX
GSE128526_TEQuantificationCOUNTS.xlsx.gz 181.5 Kb (ftp)(http) XLSX
GSE128526_sRNA_SizeDistributionAllData.xlsx.gz 9.5 Kb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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