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Series GSE128465 Query DataSets for GSE128465
Status Public on Dec 21, 2020
Title LINC00266-1-encoded peptide regulates mRNA splicing
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The mRNA transcriptome profiling and splicing profiling mediated by LINC00266-1 and LINC00266-1-encoded peptide were investigated by RNA-seq.
Overall design The mRNA profiles and mRNA splicing profiles of colon cancer cells HCT-116 (NC), HCT-116 with stably expressing LINC00266-1 ORF for encoding peptide (ORF), and HCT-116 with stably expressing 5'UTR-ORFmut in which start code ATG for encoding peptide was mutated to ATT (MT), were generated by RNA-sequencing (RNA-seq), in triplicate, using Illumina.
Contributor(s) Yan G, Zhu S, Wang J
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Submission date Mar 18, 2019
Last update date Dec 22, 2020
Contact name Guang-Rong Yan
Organization name Biomedicine Research Center, the Third Affiliated Hospital of Guangzhou Medical University
Street address 63 Duobao Road
City Guangzhou
State/province Guangdong
ZIP/Postal code 510150
Country China
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (9)
GSM3676087 HCT116_NC1
GSM3676088 HCT116_NC2
GSM3676089 HCT116_NC3
BioProject PRJNA527803
SRA SRP188720

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE128465_MTvsNC_A3SS.xlsx 1007.7 Kb (ftp)(http) XLSX
GSE128465_MTvsNC_A5SS.xlsx 690.6 Kb (ftp)(http) XLSX
GSE128465_MTvsNC_MXE.xlsx 2.2 Mb (ftp)(http) XLSX
GSE128465_MTvsNC_RI.xlsx 787.6 Kb (ftp)(http) XLSX
GSE128465_MTvsNC_SE.xlsx 9.6 Mb (ftp)(http) XLSX
GSE128465_MTvsNC_deg.xlsx 6.6 Mb (ftp)(http) XLSX
GSE128465_ORFvsNC_A3SS.xlsx 1.0 Mb (ftp)(http) XLSX
GSE128465_ORFvsNC_A5SS.xlsx 720.4 Kb (ftp)(http) XLSX
GSE128465_ORFvsNC_MXE.xlsx 2.5 Mb (ftp)(http) XLSX
GSE128465_ORFvsNC_RI.xlsx 801.0 Kb (ftp)(http) XLSX
GSE128465_ORFvsNC_SE.xlsx 10.4 Mb (ftp)(http) XLSX
GSE128465_ORFvsNC_deg.xlsx 7.1 Mb (ftp)(http) XLSX
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Processed data are available on Series record

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