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Series GSE127983 Query DataSets for GSE127983
Status Public on Nov 20, 2019
Title Genome-wide mapping of SET-Nup214, mutant NPM1 (NPM1c), and CRM1-binding sites in human leukemia or mouse ES cell lines
Organisms Homo sapiens; Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We used ChIP-seq to examine the genome-wide binding of CRM1, SET-Nup214, and NPM1c in leukemia cell lines. Our analysis revealed that CRM1, SET-Nup214, and NPM1c are preferentially targeted to HOX cluster regions.
Overall design chromatin immunoprecipitation
Contributor(s) Oka M, Yoneda Y, Nogami J, Maehara K, Harada A, Ohkawa Y
Citation(s) 31755865
Submission date Mar 07, 2019
Last update date Nov 25, 2019
Contact name Masahiro Oka
Organization name National Institutes of Biomedical Innovation, Health and Nutrition (NIBIOHN)
Lab Laboratory of Nuclear Transport Dynamics
Street address 7-6-8 Saito-Asagi
City Ibaraki
State/province Osaka
ZIP/Postal code 567-0085
Country Japan
Platforms (2)
GPL18460 Illumina HiSeq 1500 (Homo sapiens)
GPL18480 Illumina HiSeq 1500 (Mus musculus)
Samples (32)
GSM3659502 Clone #2-2 ES_INPUT
GSM3659503 Clone #2-34 ES_INPUT
GSM3659504 FLAG-NPM1 expressing ES_INPUT
BioProject PRJNA525993
SRA SRP187841

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE127983_RAW.tar 2.6 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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