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Series GSE127896 Query DataSets for GSE127896
Status Public on May 15, 2019
Title PI3K-Yap activity drives cortical gyrification and hydrocephalus in mice
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Mammalian brain evolved through several transitions between gyrencephaly and lissencephaly. Mechanisms generating gyrified or smooth brain are incompletely understood. Here we demonstrate that a short embryonic pulse of activating mutations in Pik3ca, the catalytic subunit of PI3K enzyme is sufficient to cause mouse cortical gyrification. We demonstrate that this gyrification phenotype is initiated by subtle focal regulation of apical cell adhesion and proliferation via PI3K-dependent localization of Yap protein. Treatment with verteporfin (Drug) a nuclear Yap inhibitor, attenuated over-proliferation and adhesion abnormalities, and subsequently gyrification. The purpose of this study was to compare the control and mutant mouse transcriptome, and their respective effect upon verteprofin treatment.
 
Overall design Mouse RNA profiles from postnatal day (P)0 hGFAP-cre;Pik3ca H1047R mutant and control hippocampal CA1 region, in presence or absence of a drug Verteporfin
 
Contributor(s) Roy A, Aldinger KA, Millen KJ
Citation(s) 31094678
NIH grant(s)
Grant ID Grant title Affiliation Name
R01 NS099027 Mouse models of Pik3ca brain overgrowth disorders SEATTLE CHILDREN'S RESEARCH INSTITUTE Kathleen Joyce Millen
U54 HD083091 Intellectual and Developmental Disabilities Research Center UNIVERSITY OF WASHINGTON Michael J Guralnick
Submission date Mar 05, 2019
Last update date May 17, 2019
Contact name Kimberly A Aldinger
E-mail(s) kimberly.aldinger@seattlechildrens.org
Organization name Seattle Children's Research Institute
Street address 1900 Nineth Ave
City Seattle
State/province WA
ZIP/Postal code 98101
Country USA
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (18)
GSM3656126 Ctrl-Drug-rep1
GSM3656127 Ctrl-Drug-rep2
GSM3656128 Ctrl-Drug-rep3
Relations
BioProject PRJNA525718
SRA SRP187615

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE127896_GEO_processeddata_Pik3camouseRNAseqdata_v2.txt.gz 1.9 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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