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GEO accession:
Series GSE126243
Query DataSets for GSE126243
Status
Public on Dec 08, 2020
Title
RNA m6A modification mediated by METTL3 is important for IAP heterochromatin integrity in mESCs
Organism
Mus musculus
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Other
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
33505026
Submission date
Feb 07, 2019
Last update date
Mar 09, 2021
Contact name
Yang Shi
E-mail(s)
yshi@hms.harvard.edu
Organization name
Fudan university
Street address
NO. 138, Yi-Xue-Yuan Road
City
Shanghai
ZIP/Postal code
200032
Country
China
Platforms (1)
GPL21273
HiSeq X Ten (Mus musculus)
Samples (147)
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More...
GSM3594077
Parental_METTL3_ChIP_rep1
GSM3594079
METTL3_KO_METTL3_ChIP_rep1
GSM3594081
rescue_WT_METTL3_ChIP_rep1
GSM3594083
rescue_Mut_METTL3_ChIP_rep1
GSM3594097
EB_METTL3_ChIP
GSM3594098
Parental_H3K9me3_ChIP_rep1
GSM3594100
METTL3_KO_H3K9me3_ChIP_rep1
GSM3594102
rescue_WT_H3K9me3_ChIP_rep1
GSM3594104
rescue_Mut_H3K9me3_ChIP_rep1
GSM3594122
Parental_SETDB1_ChIP_rep1
GSM3594124
METTL3_KO_SETDB1_ChIP_rep1
GSM3594127
Parental_TRIM28_ChIP_rep2
GSM3594129
METTL3_KO_TRIM28_ChIP_rep2
GSM3594130
ES_H3K4me3_ChIP
GSM3594131
ES_H3K27me3_ChIP
GSM3594132
ES_Input_ChIP
GSM3594138
Parental_H33_ChIP
GSM3594139
METTL3_KO_H33_ChIP
GSM3594140
rescue_WT_H33_ChIP
GSM3594141
rescue_Mut_H33_ChIP
GSM3594142
Parental_WGBS_rep1
GSM3594143
Parental_WGBS_rep2
GSM3594144
METTL3_KO_WGBS_rep1
GSM3594145
METTL3_KO_WGBS_rep2
GSM3594146
rescue_WT_WGBS_rep1
GSM3594147
rescue_WT_WGBS_rep2
GSM3594148
rescue_Mut_WGBS_rep1
GSM3594149
rescue_Mut_WGBS_rep2
GSM3594166
Parental_total_RNA_rep1
GSM3594167
Parental_total_RNA_rep2
GSM3594168
METTL3_KO_total_RNA_rep1
GSM3594169
METTL3_KO_total_RNA_rep2
GSM3594170
rescue_WT_total_RNA_rep1
GSM3594171
rescue_WT_total_RNA_rep2
GSM3594172
rescue_Mut_total_RNA_rep1
GSM3594173
rescue_Mut_total_RNA_rep2
GSM4307084
IAPEz_ChIRP
GSM4307085
IAPEz_ChIRP_Input
GSM4307090
YTHDC1_WT_YTHDC1_ChIP
GSM4307091
YTHDC1_KO_YTHDC1_ChIP
GSM4307092
YTHDC1_W428A_YTHDC1_ChIP
GSM4664495
Parental_YTHDC1_ChIP
GSM4664496
METTL3_KO_YTHDC1_ChIP
GSM4664497
rescue_WT_YTHDC1_ChIP
GSM4664498
rescue_Mut_YTHDC1_ChIP
GSM4664499
Parental_SETDB1_ChIP_rep2
GSM4664500
METTL3_KO_SETDB1_ChIP_rep2
GSM4664501
Parental_TRIM28_ChIP_rep1
GSM4664502
METTL3_KO_TRIM28_ChIP_rep1
GSM4664503
Parental_H4K20me3_ChIP
GSM4664504
METTL3_KO_H4K20me3_ChIP
GSM4664505
rescue_WT_H4K20me3_ChIP
GSM4664506
rescue_Mut_H4K20me3_ChIP
GSM4664507
Parental_METTL3_ChIP_rep2
GSM4664508
METTL3_KO_METTL3_ChIP_rep2
GSM4664509
rescue_WT_METTL3_ChIP_rep2
GSM4664510
rescue_Mut_METTL3_ChIP_rep2
GSM4664511
Parental_H3K9me3_ChIP_rep2
GSM4664512
METTL3_KO_H3K9me3_ChIP_rep2
GSM4664513
rescue_WT_H3K9me3_ChIP_rep2
GSM4664514
rescue_Mut_H3K9me3_ChIP_rep2
GSM4664515
DC1_WT_DC1_ChIP_rep1
GSM4664516
DC1_WT_DC1_ChIP_rep2
GSM4664517
DC1_WT_H3K9me3_ChIP_rep1
GSM4664518
DC1_WT_H3K9me3_ChIP_rep2
GSM4664519
DC1_WT_H4K20me3_ChIP_rep1
GSM4664520
DC1_WT_H4K20me3_ChIP_rep2
GSM4664521
DC1_WT_METTL3_ChIP_rep1
GSM4664522
DC1_WT_METTL3_ChIP_rep2
GSM4664523
DC1_KO_DC1_ChIP_rep1
GSM4664524
DC1_KO_DC1_ChIP_rep2
GSM4664525
DC1_KO_H3K9me3_ChIP_rep1
GSM4664526
DC1_KO_H3K9me3_ChIP_rep2
GSM4664527
DC1_KO_H4K20me3_ChIP_rep1
GSM4664528
DC1_KO_H4K20me3_ChIP_rep2
GSM4664529
DC1_KO_METTL3_ChIP_rep1
GSM4664530
DC1_KO_METTL3_ChIP_rep2
GSM4664531
DC1_W428A_DC1_ChIP_rep1
GSM4664532
DC1_W428A_DC1_ChIP_rep2
GSM4664533
DC1_W428A_H3K9me3_ChIP_rep1
GSM4664534
DC1_W428A_H3K9me3_ChIP_rep2
GSM4664535
DC1_W428A_H4K20me3_ChIP_rep1
GSM4664536
DC1_W428A_H4K20me3_ChIP_rep2
GSM4664537
DC1_W428A_METTL3_ChIP_rep1
GSM4664538
DC1_W428A_METTL3_ChIP_rep2
GSM4664539
METTL3_WT_METTL3_ChIP_rep1
GSM4664540
METTL3_WT_METTL3_ChIP_rep2
GSM4664541
METTL3_W475A_METTL3_ChIP_rep1
GSM4664542
METTL3_W475A_METTL3_ChIP_rep2
GSM4664543
METTL3_N477A_METTL3_ChIP_rep1
GSM4664544
METTL3_N477A_METTL3_ChIP_rep2
GSM4664545
METTL14_WT_METTL3_ChIP_rep1
GSM4664546
METTL14_WT_METTL3_ChIP_rep2
GSM4664547
METTL14_KO_METTL3_ChIP_rep1
GSM4664548
METTL14_KO_METTL3_ChIP_rep2
GSM4664549
RBM15_15B_WT_METTL3_ChIP_rep1
GSM4664550
RBM15_15B_WT_METTL3_ChIP_rep2
GSM4664551
RBM15_15B_DKO_METTL3_ChIP_rep1
GSM4664552
RBM15_15B_DKO_METTL3_ChIP_rep2
GSM4664553
SETDB1_WT_DC1_ChIP_rep1
GSM4664554
SETDB1_WT_DC1_ChIP_rep2
GSM4664555
SETDB1_WT_METTL3_ChIP_rep1
GSM4664556
SETDB1_WT_METTL3_ChIP_rep2
GSM4664557
SETDB1_CKO_DC1_ChIP_rep1
GSM4664558
SETDB1_CKO_DC1_ChIP_rep2
GSM4664559
SETDB1_CKO_METTL3_ChIP_rep1
GSM4664560
SETDB1_CKO_METTL3_ChIP_rep2
GSM4664561
siCtrl_METTL3_ChIP_rep1
GSM4664562
siCtrl_METTL3_ChIP_rep2
GSM4664563
siWTAP_METTL3_ChIP_rep1
GSM4664564
siWTAP_METTL3_ChIP_rep2
GSM4664565
siZC3H13_METTL3_ChIP_rep1
GSM4664566
siZC3H13_METTL3_ChIP_rep2
GSM4664567
siVIRILIZER_METTL3_ChIP_rep1
GSM4664568
siVIRILIZER_METTL3_ChIP_rep2
GSM4664569
Parental_YTHDC1_ChIP_rep2
GSM4664570
METTL3_KO_YTHDC1_ChIP_rep2
GSM4664571
rescue_WT_YTHDC1_ChIP_rep2
GSM4664572
rescue_Mut_YTHDC1_ChIP_rep2
GSM4664573
Parental_H33_ChIP_rep2
GSM4664574
METTL3_KO_H33_ChIP_rep2
GSM4664575
rescue_WT_H33_ChIP_rep2
GSM4664576
rescue_Mut_H33_ChIP_rep2
GSM4664577
IAPEz_ChIRP_rep2
GSM4664578
IAPEz_ChIRP_Input_rep2
GSM4664579
Parental_chromRNA_m6A_rep1
GSM4664580
Parental_chromRNA_m6A_rep2
GSM4664581
Parental_chromRNA_Input_rep1
GSM4664582
Parental_chromRNA_Input_rep2
GSM4664583
METTL3_KO_chromRNA_m6A_rep1
GSM4664584
METTL3_KO_chromRNA_m6A_rep2
GSM4664585
METTL3_KO_chromRNA_Input_rep1
GSM4664586
METTL3_KO_chromRNA_Input_rep2
GSM4664587
SETDB1_KO_chromRNA_m6A_rep1
GSM4664588
SETDB1_KO_chromRNA_m6A_rep2
GSM4664589
SETDB1_KO_chromRNA_Input_rep1
GSM4664590
SETDB1_KO_chromRNA_Input_rep2
GSM4664591
YTHDC1_WT_total_RNA_rep1
GSM4664592
YTHDC1_WT_total_RNA_rep2
GSM4664593
YTHDC1_KO_total_RNA_rep1
GSM4664594
YTHDC1_KO_total_RNA_rep2
GSM4664595
YTHDC1_W428A_total_RNA_rep1
GSM4664596
YTHDC1_W428A_total_RNA_rep2
GSM4859904
ALKBH5_WT_H3K9me3_ChIP_rep1
GSM4859905
ALKBH5_WT_H3K9me3_ChIP_rep2
GSM4859906
ALKBH5_KO_H3K9me3_ChIP_rep1
GSM4859907
ALKBH5_KO_H3K9me3_ChIP_rep2
This SuperSeries is composed of the following SubSeries:
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More...
GSE126238
RNA m6A modification mediated by METTL3 is important for IAP heterochromatin integrity in mESCs (ChIP-seq)
GSE126239
RNA m6A modification mediated by METTL3 is important for IAP heterochromatin integrity in mESCs (WGBS)
GSE126242
RNA m6A modification mediated by METTL3 is important for IAP heterochromatin integrity in mESCs (total RNA-seq)
GSE145134
RNA m6A modification mediated by METTL3 is important for IAP heterochromatin integrity in mESCs [YTHDC1_ChIRP-Seq]
GSE145135
RNA m6A modification mediated by METTL3 is important for IAP heterochromatin integrity in mESCs [YTHDC1_ChIP]
GSE154135
RNA m6A modification mediated by METTL3 is important for IAP heterochromatin integrity in mESCs (ChIP-Seq 2)
GSE154137
RNA m6A modification mediated by METTL3 is important for IAP heterochromatin integrity in mESCs (ChIRP-Seq)
GSE154138
RNA m6A modification mediated by METTL3 is important for IAP heterochromatin integrity in mESCs (MeRIP-Seq)
GSE154139
RNA m6A modification mediated by METTL3 is important for IAP heterochromatin integrity in mESCs (total RNA-Seq 2)
GSE160103
RNA m6A modification mediated by METTL3 is important for IAP heterochromatin integrity in mESCs (ChIP-Seq 3)
Relations
BioProject
PRJNA521368
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE126243_RAW.tar
22.7 Gb
(http)
(custom)
TAR (of BW, TXT)
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