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Series GSE125833 Query DataSets for GSE125833
Status Public on Nov 25, 2020
Title lncRNA TINCR antisense pulldown of interacting RNAs
Organism Homo sapiens
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary Purpose: Identify RNA interactome of lncRNA TINCR
Methods: Primary melanoma cell lines WM902B and MMC70 lysates hybridized with TINCR antisense DNA oligos
Results: we found that TINCR silencing induces activation of translation of ATF4 and other stress responsive RNAs.
Overall design RNA Peak Analysis in two independent replicates ( even and odd sets of DNA antisense oligos) in WM902B and MMC70 melanoma cells
Contributor(s) Melixetian M, Bossi D, Mihalovich M, Punzi S, Barozzi I, Testa G, Cuomo A, Bonaldi T, Leucci E, Marine J, Minucci S, Pelicci PG, Lanfrancone L
Citation(s) 33586907
Submission date Jan 29, 2019
Last update date Feb 26, 2021
Contact name Marine Melixetian
Organization name European Institute of Oncology
Street address via Adamello 16
City Milano
ZIP/Postal code 20141
Country Italy
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (6)
GSM3582932 WM902B_RAP_input
GSM3582933 WM902B_RAP_rep1
GSM3582934 WM902B_RAP_rep2
This SubSeries is part of SuperSeries:
GSE125835 Long non-coding RNA TINCR suppresses metastatic melanoma dissemination by preventing ATF4 translation
BioProject PRJNA517674
SRA SRP182818

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE125833_MMC70_exomePeak_common.txt.gz 28.1 Kb (ftp)(http) TXT
GSE125833_WM902B_exomePeak_common.txt.gz 134.0 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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