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Series GSE124643 Query DataSets for GSE124643
Status Public on Dec 31, 2019
Title Combination Targeting of the Bromodomain and Acetyltransferase Active Site of p300/CBP [RNA-seq]
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary p300 and CBP are highly related histone acetyltransferase (HAT) enzymes that regulate gene expression, and their dysregulation has been linked to cancer and other diseases. p300/CBP is composed of a number of domains including a HAT domain which is inhibited by the small molecule A-485 and an acetyl-lysine binding bromodomain which was recently found to be selectively antagonized by the small molecule I-CBP112. Here we show that the combination of I-CBP112 and A-485 can synergize to inhibit prostate cancer cell proliferation. We find that the combination confers a dramatic reduction in p300 chromatin occupancy compared to the individual effects of blocking either domain alone. Accompanying this loss of p300 on chromatin, combination treatment predominantly leads to the reduction of specific mRNAs including androgen-dependent and pro-oncogenic prostate genes such as KLK3 (PSA) and c-Myc. Consistent with p300 chromatin binding directly affecting gene expression, mRNAs that are significantly reduced by combination treatment also exhibit a strong reduction in p300 chromatin occupancy at their gene promoters. The relatively few mRNAs that are up-regulated upon combination treatment show no correlation with p300 occupancy. These studies provide support for the pharmacologic advantage of concurrent targeting of two domains within one key epigenetic modification enzyme.
 
Overall design LNCaP cells were divided into 4 different drug treatment groups (including DMSO control) and were treated with I-CBP112 and/or A-485 for 24 h after which they were analyzed for total mRNA levels.
 
Contributor(s) Zucconi BE, Cole PA
Citation(s) 30924641
Submission date Jan 03, 2019
Last update date Jan 14, 2020
Contact name Beth Zucconi
E-mail(s) bethzucconi@gmail.com
Organization name Brigham & Women's Hospital
Department Medicine
Lab P.A. Cole
Street address 77 Avenue Louis Pasteur, NRB 164
City Boston
State/province Massachusetts
ZIP/Postal code 02115
Country USA
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (8)
GSM3538389 DMSO_1_RNASeq
GSM3538390 ICBP112_1_RNASeq
GSM3538391 A485_1_RNASeq
This SubSeries is part of SuperSeries:
GSE124644 Combination Targeting of the Bromodomain and Acetyltransferase Active Site of p300/CBP
Relations
BioProject PRJNA512902
SRA SRP175116

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Supplementary file Size Download File type/resource
GSE124643_Cuff_Isoform_Counts.csv.gz 2.6 Mb (ftp)(http) CSV
GSE124643_DMSO_vs_112.deseq.xls.gz 1002.2 Kb (ftp)(http) XLS
GSE124643_DMSO_vs_228.deseq.xls.gz 1.0 Mb (ftp)(http) XLS
GSE124643_DMSO_vs_2x.deseq.xls.gz 1.0 Mb (ftp)(http) XLS
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Processed data are available on Series record

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