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Series GSE124463 Query DataSets for GSE124463
Status Public on Jan 01, 2020
Title Promoter capture Hi-C identifies long-range promoter contact dynamics in response to diet and the development of non-alcoholic fatty liver disease
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary We profiled the chromatin interactions in liver from mice fed either an obesogenic or control diet.
Overall design Examination of chromatin interactions, histone modification, gene expression and transcription factors binding in mice liver samples
Contributor(s) Qin Y, Roberts JD, Grimm SA, Chrysovergis K, Wade PA
Citation(s) 32075973
Submission date Dec 28, 2018
Last update date Mar 09, 2020
Contact name Paul A Wade
Phone 919-541-3392
Organization name NIEHS
Department Laboratory of Molecular Carcinogenesis
Street address 111 TW Alexander Drive
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
Platforms (2)
GPL19057 Illumina NextSeq 500 (Mus musculus)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (46)
GSM3534484 HFD_H3K27ac_ChIPSeq_replicate1
GSM3534485 HFD_H3K27ac_ChIPSeq_replicate2
GSM3534486 HFD_H3K27ac_ChIPSeq_replicate3
BioProject PRJNA512094
SRA SRP174637

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE124463_HF.minScore_5.maxDist_1Mb.txt.gz 1.8 Mb (ftp)(http) TXT
GSE124463_HF_TADs.txt.gz 81.8 Kb (ftp)(http) TXT
GSE124463_LF.minScore_5.maxDist_1Mb.txt.gz 1.8 Mb (ftp)(http) TXT
GSE124463_LF_TADs.txt.gz 79.8 Kb (ftp)(http) TXT
GSE124463_RAW.tar 4.3 Gb (http)(custom) TAR (of BED, BIGWIG, TXT)
GSE124463_RNAseq_TPM_per_gene_DEseq2.txt.gz 1.3 Mb (ftp)(http) TXT
GSE124463_RNAseq_counts_per_gene.txt.gz 742.8 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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