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Series GSE123918 Query DataSets for GSE123918
Status Public on Dec 01, 2020
Title ChIP of SMC2 at defined cell cycle stages
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Investigating binding of the SMC2 protein genome-wide in synchronised HCT116 cells at early S, late S and G2/M
Overall design HCT116 cells were synchronised at the G1/S boundary and released either in normal media or in media supplemented with 0.4microM aphidicolin to induce replication stress. Cells were harvested at 4, 8 and 10h post release, corresponding to early S, late S and G2/M. Cells were fixed and ChIP for SMC2 was performed
Contributor(s) Nozawa R, Boteva L, Gilbert N
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Submission date Dec 17, 2018
Last update date Dec 04, 2020
Contact name Lora Boteva
Phone +44 (0) 131 651 8551
Organization name University of Edinburgh
Department Institute of Genetics and Molecular Medicine
Lab Gilbert Lab
Street address Crewe Road
City Edinburgh
State/province City of Edinburgh, Midlothian
ZIP/Postal code EH4 2XU
Country United Kingdom
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (15)
GSM3516861 Control rep 1 4h
GSM3516862 Control rep 1 8h
GSM3516863 Control rep 1 10h
BioProject PRJNA510321
SRA SRP173585

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Supplementary file Size Download File type/resource
GSE123918_RAW.tar 353.0 Mb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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