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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jan 15, 2019 |
| Title |
Mammalian Hbs1L deficiency causes Pelota depletion and is associated with a unique phenotype |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Other
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| Summary |
Hbs1 has been established as a central component of the cell’s translational quality control pathways in both yeast and prokaryotic models; however, the functional characteristics of its human ortholog (Hbs1L) have not been well-defined. We recently reported a novel human phenotype resulting from a mutation in the critical coding region of the HBS1L gene characterized by facial dysmorphism, severe growth restriction, axial hypotonia, global developmental delay and retinal pigmentary deposits. Here we further characterize downstream effects of the human HBS1L mutation. HBS1L has three transcripts in humans, and RT-PCR demonstrated reduced mRNA levels corresponding with transcripts V1 and V2 whereas V3 expression was unchanged. Western blot analyses revealed HBS1L protein was absent in proband samples. Additionally, polysome profiling revealed an abnormal aggregation of 80S monosomes in patient cells under baseline conditions. RNASeq data corresponded to the patient phenotype, with biological process analysis showing skeletal system development and sensory development genes being most altered between patient and controls. Ribosomal sequencing demonstrated an increased translation efficiency of ribosomal RNA in Hbs1L-deficient fibroblasts, suggesting that there may be a compensatory increase in ribosome translation to accommodate the increased 80S monosome peak. Furthermore, lack of Hbs1L caused depletion of Pelota protein in both patient cells and mouse tissues, while PELO mRNA levels were unaffected. Inhibition of proteasomal function partially restored Pelota expression in human Hbs1L-deficient cells. We also describe a mouse model harboring a knockdown mutation in the murine Hbs1l gene that shared several of the phenotypic elements observed in the Hbs1L-deficient human including facial dysmorphism, growth restriction and retinal deposits. The Hbs1lKO mice similarly demonstrate diminished Pelota levels that were rescued by proteasome inhibition.
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| Overall design |
12 physical samples of cell cultures (patient and 2 healthy individuals as controls, 2-6 replicates per individual). Ribo-seq and mRNA-seq libraries prepared from the same samples (matched within sample)
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| Contributor(s) |
O’Connell AE, Gerashchenko MV, O'Donohue M, Rosen SM, Huntzinger E, Gleeson D, Galli A, Ryder E, Cao S, Murphy Q, Kazarounian S, Morton SU, Schmitz-Abe K, Gladyshev VN, Gleizes P, Seraphin B, Agrawal PB |
| Citation(s) |
30707697 |
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| Submission date |
Dec 10, 2018 |
| Last update date |
Feb 01, 2021 |
| Contact name |
Pankaj Agrawal |
| E-mail(s) |
pagrawal@enders.tch.harvard.edu
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| Organization name |
Boston Children's Hospital
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| Street address |
300 Longwood ave
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| City |
Boston |
| ZIP/Postal code |
02115 |
| Country |
USA |
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| Platforms (1) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
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| Samples (22)
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| Relations |
| BioProject |
PRJNA509230 |
| SRA |
SRP173240 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE123564_RAW.tar |
208.1 Mb |
(http)(custom) |
TAR (of TXT) |
| GSE123564_patient_vs_healthy_Riboseq.csv.gz |
588.1 Kb |
(ftp)(http) |
CSV |
| GSE123564_patient_vs_healthy_TE.csv.gz |
448.9 Kb |
(ftp)(http) |
CSV |
| GSE123564_patient_vs_healthy_mRNAseq.csv.gz |
698.2 Kb |
(ftp)(http) |
CSV |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
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