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Series GSE123428 Query DataSets for GSE123428
Status Public on Dec 01, 2021
Title ROS control in human iPS cells reveals early events in spontaneous carcinogenesis
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We developed a system to control the intracellular level of reactive oxygen species (ROS) in human iPS cells. By introducing a specific substitution (I69E) into the SDHC protein, a component of the mitochondrial respiratory chain complex, the intracellular ROS level considerably increased. This caused an abnormal development of iPS cells, and these abnormalities were reverted by the overproduction of mitochondria-targeted catalase. When ROS-overproducing iPS cells (ChiPSC12-M cells) were used for subcutaneous inoculation on the backs of nude mice, the mice exhibited tumor formation. The expression of tumor-related FOXC1 transcription factor increased as early as 4 h after the the development of ROS-overproducing iPS cells was initiated. An RNA-seq analysis revealed that 27 transcript clusters among the more than 20,000 transcrips that were examined were highly expressed at 4 h after the initiation of tumor development in ChiPSC12-M cells. Some of these overexpressed transcripts might make networks to activate protooncogenes for spontaneous carcinogenesis.
Overall design ChiPSC12-M was cultured with Day 0 endoderm differentiation medium and the medium was replaced with Day 1 differentiation medium with or without Tet-Express solution and the cells were cultured for 4 h. Total RNA from each cell was isolated using Isogen (Nippon Gene Co., Ltd, Toyama, Japan) and was subjected to RNA-Sequencing (Cell Innovator, Kyushu Univ., Fukuoka, Japan).
Contributor(s) Oka S, Hayashi M, Taguchi K, Tsuzuki T, Sekiguchi M
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Submission date Dec 06, 2018
Last update date Dec 01, 2021
Contact name Sugako Oka
Organization name Fukoka Dental College
Street address 2-15-1, Tamura, Sawara-ku
City Fukuoka
ZIP/Postal code 814-0193
Country Japan
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (6)
GSM3503078 Untreated ChiPSC12-M, biological rep1
GSM3503079 Untreated ChiPSC12-M, biological rep2
GSM3503080 Untreated ChiPSC12-M, biological rep3
BioProject PRJNA508743
SRA SRP172734

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Supplementary file Size Download File type/resource
GSE123428_normalized_counts.txt.gz 752.0 Kb (ftp)(http) TXT
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