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Series GSE122812 Query DataSets for GSE122812
Status Public on Nov 10, 2020
Title Gene expression-based, mouse primary BC CML after knockdown of AMD1 gene.
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We report the gene expression profiling of mouse BC CML model which were knockdown with either shControl or shAMD1 constructs. By obtaining RNA from primary BC CML cells from those mice (n: 3 for each shRNA),we find that thousands gene were dysregulated by AMD1 knockdown.
Overall design Examination of gene expression profiling from 3 control BC CML mouse cells and 3 shRNA-mediated AMD1 knockdown in BC CML mouse cells
Contributor(s) Kwon H, Sari IN
Citation(s) 33203990
Submission date Nov 21, 2018
Last update date Feb 14, 2021
Contact name Ita Novita Sari
Phone +821021972195
Organization name Soonchunhyang University
Department Soonchunhyang Institute of Medi-Bio Science
Street address Bongjeong-ro 25, Dongnam-gu
City Cheonan
State/province Chungcheongnam-do
ZIP/Postal code 31151
Country South Korea
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (6)
GSM3485883 shAMD1_1
GSM3485884 shAMD1_2
GSM3485885 shAMD1_3
BioProject PRJNA506419
SRA SRP170042

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Supplementary file Size Download File type/resource
GSE122812_1.Ontology_1.5fold_dw.xlsx 1.0 Mb (ftp)(http) XLSX
GSE122812_1.Ontology_1.5fold_up.xlsx 2.2 Mb (ftp)(http) XLSX
GSE122812_1.Ontology_match_dw.xlsx 290.7 Kb (ftp)(http) XLSX
GSE122812_1.Ontology_match_up.xlsx 491.9 Kb (ftp)(http) XLSX
GSE122812_1.shLacZ-1_shLacZ-2_shLacZ-3.vs.shAmd1-2_shAmd1-3_shAmd1-4.xlsx 4.4 Mb (ftp)(http) XLSX
GSE122812_1.shLacZ-1_shLacZ-2_shLacZ-3.vs.shAmd1-2_shAmd1-3_shAmd1-4_Update.csv.gz 2.2 Mb (ftp)(http) CSV
GSE122812_1.shLacZ-1_shLacZ-2_shLacZ-3.vs.shAmd1-2_shAmd1-3_shAmd1-4_Update_1.5_fold.csv.gz 261.0 Kb (ftp)(http) CSV
GSE122812_1.shLacZ-1_shLacZ-2_shLacZ-3.vs.shAmd1-2_shAmd1-3_shAmd1-4_Update_1.5_fold_with_FDR_0.1.csv.gz 182.4 Kb (ftp)(http) CSV
GSE122812_1.shLacZ-1_shLacZ-2_shLacZ-3.vs.shAmd1-2_shAmd1-3_shAmd1-4_Update_1.5_fold_with_p_value_0.05.csv.gz 206.4 Kb (ftp)(http) CSV
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Processed data are available on Series record

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