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Series GSE12163 Query DataSets for GSE12163
Status Public on Jul 19, 2008
Title Nucleosome occupancy in wild type and histone H3(A111G) yeast
Organism Saccharomyces cerevisiae
Experiment type Genome binding/occupancy profiling by genome tiling array
Summary We screened for histone H3 mutations that cause derepression of the uninduced CHA1 promoter and identified six mutants, including one, H3(A111G), that causes a constitutively active chromatin configuratin at the uninduced CHA1 promoter. We examined genomewide nucleosome occupancy in the A111G mutant and compared it to wild type yeast; that is the data deposited here.

Keywords: Nucleosomal DNA from wild type and histone H3(A111G) mutant yeast
Overall design Three A111G mutant and two wild type samples were analyzed. These were compared to three genomic DNA samples (Lee et al., Nature Genetics doi:10.1038/ng2117) to generate the .bar files deposited here.
Contributor(s) He Q, Morse RH
Citation(s) 18658255
Submission date Jul 18, 2008
Last update date Jan 09, 2016
Contact name Randall Heywood Morse
Phone 518 486-3116
Fax 518 474-3181
Organization name Wadsworth Center
Lab Developmental Genetics
Street address
City Albany
State/province NY
ZIP/Postal code 12201-2002
Country USA
Platforms (2)
GPL7070 Scerevisiae_tlg Array
GPL7250 [Sc03b_MR] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array
Samples (8)
GSM306301 Wild type 1
GSM306302 Wild type 2
GSM306303 Histone H3 A111G mutant 1
BioProject PRJNA113453

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource 20.3 Mb (ftp)(http) BAR
GSE12163_RAW.tar 385.4 Mb (http)(custom) TAR (of CEL, GRD) 20.3 Mb (ftp)(http) BAR
Processed data are available on Series record

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