NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE121492 Query DataSets for GSE121492
Status Public on Feb 24, 2020
Title Combined mutation of C/EBPa and GATA-2 induce bi-lineage acute erythroid leukemia through transformation of a neomorphic neutrophil-erythroid progenitor [RNA-seq]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Acute erythroid leukemia (AEL) most commonly involves transformation of both the myeloid and erythroid lineages. However, the mutations that cause AEL and the nature of the transformed cell that sustains the bi-lineage leukemia phenotype remain unknown. We here show that combined bi-alleCD45.2+LKFcgRII/III+CD55- C/EBPa and GATA-2 zinc finger 1 (ZnF1) mutations are sufficient to induce bi-lineage AEL, and that the leukemia-initiating cell has a Lin–Sca-1–c-Kit+CD150–FcyRII/III+ surface phenotype, consistent with a committed myeloid progenitor. However, we find that in the presence of bi-alleCD45.2+LKFcgRII/III+CD55- C/EBPa mutation this cell population acquires ectopic erythroid gene expression and lineage potential, leading to the formation of neomorphic neutrophil-erythroid lineage progenitors, which upon transformation generate the bi-lineage leukemia-initiating cell. These results identify C/EBPa and GATA-2 ZnF1 mutations as causative of AEL, and demonstrate that transcriptional reprogramming by a leukemia-initiating mutation can re-define the lineage output of the resulting leukemia-initiating cells.
 
Overall design RNA-sequencing of bulk CD45.2+LKFcgRII/III+CD55-, CD45.1-EGFP-CD71hiTer119-/locKit+, and CD45.2+Mac1+cKitlo BM cells from three different competitively transplants recipients at pre-leukemic stage and corresponding leukemic populations in WT, Gata2G320D+ (G), CebpaK313KK/Lp30 (KL), and CebpaK313KK/Lp30;Gata2G320D/+ (KLG) mice
 
Contributor(s) Di Genua C, Nerlov C
Citation(s) 32330454
Submission date Oct 18, 2018
Last update date May 19, 2020
Contact name Cristina Di Genua
E-mail(s) cristina.digenua@ndcls.ox.ac.uk
Organization name University of Oxford
Department Weatherall Institute of Molecular Medicine
Street address Headley Way
City Oxford
ZIP/Postal code OX3 9DS
Country United Kingdom
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (56)
GSM3438148 C-1
GSM3438149 C-10
GSM3438150 C-11
This SubSeries is part of SuperSeries:
GSE141813 Combined mutation of C/EBPa and GATA-2 induce bi-lineage acute erythroid leukemia through transformation of a neomorphic neutrophil-erythroid progenitor
Relations
BioProject PRJNA497459
SRA SRP166121

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE121492_rpkm_AEL.csv.gz 3.4 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap