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Series GSE121361 Query DataSets for GSE121361
Status Public on Feb 28, 2019
Title TNF-α induces IL-32 expression in HEK293 cells
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary To see DNA methylation-repressed genes, we did RNA-seq in 5-aza treated cells and control cells. And we also did P65 ChIP-seq to see P65-dependent expressions.
Overall design For RNA-seq, 5-aza treated cells and control cells were measured in two biological replicates; P65 ChIP-seq was done in ctrl cells and 12hr-TNF treated cells with one replicate respectively.
Contributor(s) Zhao Z, Lan M, Li J, Dong Q, Li X, Liu B, Li G, Wang H, Zhang Z, Zhu B
Citation(s) 30824537
Submission date Oct 16, 2018
Last update date Mar 04, 2019
Contact name Zhuqiang Zhang
Organization name Institute of Biophysics, CAS
Street address 15 Datun Road, Chaoyang District.
City Beijing
State/province ---
ZIP/Postal code 100101
Country China
Platforms (2)
GPL23227 BGISEQ-500 (Homo sapiens)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (12)
GSM3432523 5Aza-dC-treat-RNAseq-rep1 dataset 2
GSM3432524 5Aza-dC-treat-RNAseq-rep2 dataset 2
GSM3432525 ctrl-RNAseq-rep1
BioProject PRJNA497122
SRA SRP165920

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE121361_RAW.tar 1.9 Gb (http)(custom) TAR (of BIGWIG, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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