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GEO accession:
Series GSE121053
Query DataSets for GSE121053
Status
Public on May 21, 2021
Title
AP-1 is a temporally regulated dual gatekeeper of reprogramming to pluripotency
Organisms
Homo sapiens
;
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Contributor(s)
Markov GJ
,
Mai T
,
Nair S
,
Shcherbina A
,
Wang YX
,
Burns DM
,
Kundaje A
,
Blau HM
Citation(s)
34088849
NIH grant(s)
Grant ID
Grant title
Affiliation
Name
R01 HG009674
Learning Regulatory Drivers of Chromatin and Expression Dynamics during Nuclear Reprogramming
STANFORD UNIVERSITY
HELEN M BLAU
Submission date
Oct 10, 2018
Last update date
Jun 06, 2021
Contact name
Helen M Blau
Organization name
Stanford University
Department
Baxter Laboratories
Street address
269 Campus Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305
Country
USA
Platforms (4)
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GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL19415
Illumina NextSeq 500 (Homo sapiens; Mus musculus)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
GPL25526
Illumina NovaSeq 6000 (Homo sapiens; Mus musculus)
Samples (61)
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GSM5283087
ChiP-Seq c-Jun rep1
GSM5283088
ChiP-Seq c-Jun rep2
GSM5283089
ChIP-Seq input rep1
GSM5283090
ChIP-Seq input rep2
GSM5283091
ATAC-Seq Fibroblast rep1
GSM5283092
ATAC-Seq Fibroblast rep2
GSM5283093
ATAC-Seq Fibroblast rep3
GSM5283094
ATAC-Seq Fibroblast rep4
GSM5283095
ATAC-Seq Fibroblast rep5
GSM5283096
ATAC-Seq Homokaryon
GSM5283097
ATAC-Seq Co-culture rep1
GSM5283098
ATAC-Seq Co-culture rep2
GSM5283099
ATAC-Seq Co-culture rep3
GSM5283100
ATAC-Seq 3hr rep1
GSM5283101
ATAC-Seq 3hr rep2
GSM5283102
ATAC-Seq 3hr rep3
GSM5283103
ATAC-Seq 16hr rep1
GSM5283104
ATAC-Seq 16hr rep2
GSM5283105
ATAC-Seq 16hr rep3
GSM5283106
ATAC-Seq 16hr rep4
GSM5283107
ATAC-Seq 48hr rep1
GSM5283108
ATAC-Seq 48hr rep2
GSM5283109
ATAC-Seq Co-culture rep1 + dnAP-1
GSM5283110
ATAC-Seq Co-culture rep2 + dnAP-1
GSM5283111
ATAC-Seq Co-culture rep3 + dnAP-1
GSM5283112
ATAC-Seq 3hr rep1 + dnAP-1
GSM5283113
ATAC-Seq 3hr rep2 + dnAP-1
GSM5283114
ATAC-Seq 3hr rep3 + dnAP-1
GSM5283115
ATAC-Seq 16hr rep1 + dnAP-1
GSM5283116
ATAC-Seq 16hr rep2 + dnAP-1
GSM5283117
ATAC-Seq 16hr rep3 + dnAP-1
GSM5283118
ATAC-Seq 48hr rep1 + dnAP-1
GSM5283119
ATAC-Seq 48hr rep2 + dnAP-1
GSM5283120
ATAC-Seq 48hr rep3 + dnAP-1
GSM5283121
RNA-Seq Fibroblast rep1
GSM5283122
RNA-Seq Fibroblast rep2
GSM5283123
RNA-Seq Fibroblast rep3
GSM5283124
RNA-Seq Fibroblast rep4
GSM5283125
RNA-Seq Homokaryon
GSM5283126
RNA-Seq Co-culture rep1
GSM5283127
RNA-Seq Co-culture rep2
GSM5283128
RNA-Seq 3hr rep1
GSM5283129
RNA-Seq 3hr rep2
GSM5283130
RNA-Seq 16hr rep1
GSM5283131
RNA-Seq 16hr rep2
GSM5283132
RNA-Seq 16hr rep3
GSM5283133
RNA-Seq 48hr rep1
GSM5283134
RNA-Seq 48hr rep2
GSM5283135
RNA-Seq 48hr rep3
GSM5283136
RNA-Seq Co-culture rep1 + dnAP-1
GSM5283137
RNA-Seq Co-culture rep2 + dnAP-1
GSM5283138
RNA-Seq Co-culture rep3 + dnAP-1
GSM5283139
RNA-Seq 3hr rep1 + dnAP-1
GSM5283140
RNA-Seq 3hr rep2 + dnAP-1
GSM5283141
RNA-Seq 3hr rep3 + dnAP-1
GSM5283142
RNA-Seq 16hr rep1 + dnAP-1
GSM5283143
RNA-Seq 16hr rep2 + dnAP-1
GSM5283144
RNA-Seq 16hr rep3 + dnAP-1
GSM5283145
RNA-Seq 48hr rep1 + dnAP-1
GSM5283146
RNA-Seq 48hr rep2 + dnAP-1
GSM5283147
RNA-Seq 48hr rep3 + dnAP-1
This SuperSeries is composed of the following SubSeries:
GSE120992
AP-1 is a temporally regulated dual gatekeeper of reprogramming to pluripotency (ATAC-Seq)
GSE121052
AP-1 is a temporally regulated dual gatekeeper of reprogramming to pluripotency (RNA-Seq)
GSE173937
AP-1 is a temporally regulated dual gatekeeper of reprogramming to pluripotency (ChIP-Seq)
Relations
BioProject
PRJNA495467
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE121053_RAW.tar
4.1 Gb
(http)
(custom)
TAR (of BW)
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