|
| Status |
Public on Feb 01, 2019 |
| Title |
Binding profile of the bZIP transcription factor, ATF-7, in C. elegans on pathogenic Pseudomonas aeruginosa |
| Organism |
Caenorhabditis elegans |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
ChIP-seq of ATF-7::GFP from Wild Type or pmk-1 mutant animals exposed to either non-pathogenic E. coli OP50 or pathogenic P. aeruginosa PA14
|
| |
|
| Overall design |
ChIP profiles were generated using 3 replicates (>15,000 animals each) of each condition were prepared and sequenced, except for WT on PA14 which had only 2 replicates. Sequenced on Illumina HiSeq2000
|
| |
|
| Contributor(s) |
Fletcher M, Tillman EJ, Butty V, Kim DH |
| Citation(s) |
30789901 |
| |
| Submission date |
Aug 30, 2018 |
| Last update date |
Mar 14, 2019 |
| Contact name |
Dennis Kim |
| Organization name |
MIT
|
| Street address |
31 Ames Street
|
| City |
Cambridge |
| State/province |
MA |
| ZIP/Postal code |
02139 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL13657 |
Illumina HiSeq 2000 (Caenorhabditis elegans) |
|
| Samples (14)
|
|
| This SubSeries is part of SuperSeries: |
| GSE119294 |
C. elegans on pathogenic Pseudomonas aeruginosa |
|
| Relations |
| BioProject |
PRJNA488661 |
| SRA |
SRP159195 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE119293_N2_PA14_control.tdf |
19.5 Mb |
(ftp)(http) |
TDF |
| GSE119293_RAW.tar |
470.8 Mb |
(http)(custom) |
TAR (of TDF, WIG) |
| GSE119293_qd328_OP50.tdf |
19.4 Mb |
(ftp)(http) |
TDF |
| GSE119293_qd328_OP50_vs_N2_PA14_summit_peaks.narrowPeak.gz |
190.5 Kb |
(ftp)(http) |
NARROWPEAK |
| GSE119293_qd328_PA14.tdf |
19.3 Mb |
(ftp)(http) |
TDF |
| GSE119293_qd328_PA14_vs_N2_PA14_summit_peaks.narrowPeak.gz |
168.0 Kb |
(ftp)(http) |
NARROWPEAK |
| GSE119293_qd328_pmk1_OP50.tdf |
19.6 Mb |
(ftp)(http) |
TDF |
| GSE119293_qd328_pmk1_OP50_vs_N2_PA14_summit_peaks.narrowPeak.gz |
190.2 Kb |
(ftp)(http) |
NARROWPEAK |
| GSE119293_qd328_pmk1_PA14.tdf |
19.3 Mb |
(ftp)(http) |
TDF |
| GSE119293_qd328_pmk1_PA14_vs_N2_PA14_summit_peaks.narrowPeak.gz |
167.7 Kb |
(ftp)(http) |
NARROWPEAK |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
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