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Series GSE119237 Query DataSets for GSE119237
Status Public on Aug 29, 2020
Title SFP1 (RNA-seq)
Organisms Schizosaccharomyces pombe; Saccharomyces cerevisiae; Nakaseomyces glabratus; Naumovozyma castellii; Saccharomyces paradoxus; Kluyveromyces lactis
Experiment type Expression profiling by high throughput sequencing
Summary We measured global expression profiles in SFP1 deletion mutants and isogenic wild type strains during lag and log phase growth. To match the physiology of each species as well as minimize the effect on gene expression from differences in early growth rates, we profiled expression during log growth and lag after glucose repletion as previously described (Thompson et al., 2013).
Overall design For each species, there are three replicates (A,B,C). Each Sfp1 mutant was compared to the corresponding WT at the corresponding time point (lag phase) or stage of log phase growth.
Contributor(s) Delorey T, de Boer C, Knaack S, Roy S
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Submission date Aug 30, 2018
Last update date Aug 29, 2020
Contact name Carl G de Boer
Organization name The Broad Institute
Lab Aviv Regev
Street address 415 Main St
City Cambridge
State/province MA
ZIP/Postal code 02139
Country USA
Platforms (6)
GPL13821 Illumina HiSeq 2000 (Saccharomyces cerevisiae)
GPL13988 Illumina HiSeq 2000 (Schizosaccharomyces pombe)
GPL17602 Illumina HiSeq 2000 (Saccharomyces paradoxus)
Samples (58)
GSM3362039 cglab wt_A
GSM3362040 cglab wt_B
GSM3362041 cglab wt_C
This SubSeries is part of SuperSeries:
GSE119238 The roles of duplication and divergence in the evolution of a transcription factor
BioProject PRJNA488590
SRA SRP159150

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE119237_Cgla.Gene.logFC.txt.gz 370.9 Kb (ftp)(http) TXT
GSE119237_Cgla.OG.logFC.txt.gz 283.3 Kb (ftp)(http) TXT
GSE119237_Cgla.TMM.txt.gz 241.0 Kb (ftp)(http) TXT
GSE119237_Cgla.counts.txt.gz 84.8 Kb (ftp)(http) TXT
GSE119237_Klac.Gene.logFC.txt.gz 204.8 Kb (ftp)(http) TXT
GSE119237_Klac.OG.logFC.txt.gz 151.4 Kb (ftp)(http) TXT
GSE119237_Klac.TMM.txt.gz 184.6 Kb (ftp)(http) TXT
GSE119237_Klac.counts.txt.gz 68.4 Kb (ftp)(http) TXT
GSE119237_Ncas.Gene.logFC.txt.gz 426.0 Kb (ftp)(http) TXT
GSE119237_Ncas.OG.logFC.txt.gz 290.5 Kb (ftp)(http) TXT
GSE119237_Ncas.TMM.txt.gz 274.9 Kb (ftp)(http) TXT
GSE119237_Ncas.counts.txt.gz 93.4 Kb (ftp)(http) TXT
GSE119237_OG_to_Scer-GNs.txt.gz 30.9 Kb (ftp)(http) TXT
GSE119237_Scer.Gene.logFC.txt.gz 482.7 Kb (ftp)(http) TXT
GSE119237_Scer.OG.logFC.txt.gz 340.5 Kb (ftp)(http) TXT
GSE119237_Scer.TMM.txt.gz 323.5 Kb (ftp)(http) TXT
GSE119237_Scer.counts.txt.gz 119.6 Kb (ftp)(http) TXT
GSE119237_Spar.Gene.logFC.txt.gz 160.7 Kb (ftp)(http) TXT
GSE119237_Spar.OG.logFC.txt.gz 114.2 Kb (ftp)(http) TXT
GSE119237_Spar.TMM.txt.gz 491.3 Kb (ftp)(http) TXT
GSE119237_Spar.counts.txt.gz 150.0 Kb (ftp)(http) TXT
GSE119237_Spom.Gene.logFC.txt.gz 193.9 Kb (ftp)(http) TXT
GSE119237_Spom.OG.logFC.txt.gz 149.2 Kb (ftp)(http) TXT
GSE119237_Spom.TMM.txt.gz 175.6 Kb (ftp)(http) TXT
GSE119237_Spom.counts.txt.gz 100.1 Kb (ftp)(http) TXT
GSE119237_orthology_melted_aliases.txt.gz 930.8 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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