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| Status |
Public on Sep 05, 2018 |
| Title |
ATAC-seq data |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
The immune system depends on a balanced interplay among a variety of specialized cell types transitioning between resting and stimulated states. While epigenome mapping efforts have focused on resting ex vivo immune cells, efforts to characterize stimulation-induced chromatin changes of diverse cell types has been limited. Thus, we collected ATAC-seq and RNA-seq data from immune cell types under resting and stimulated conditions from blood of healthy individuals, and cell types from fetal thymus samples.
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| Overall design |
175 ATAC-seq samples of 25 blood cell types from healthy donors.
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| Contributor(s) |
Calderon D, Nguyen ML, Mezger A |
| Citation |
Diego Calderon, Michelle L.T. Nguyen, Anja Mezger, Arwa Kathiria, Vinh Nguyen, Ninnia Lescano, Beijing Wu, John Trombetta, Jessica V. Ribado, David A. Knowles, Ziyue Gao, Audrey V. Parent, Trevor D. Burt, Mark S. Anderson, Lindsey A. Criswell, William J. Greenleaf, Alexander Marson, and Jonathan K. Pritchard. Landscape of stimulation-responsive chromatin across diverse human immune cells. bioRxiv 409722; doi:10.1101/409722
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| Submission date |
Aug 06, 2018 |
| Last update date |
Mar 21, 2019 |
| Contact name |
Diego Calderon |
| E-mail(s) |
dcal@uw.edu
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| Organization name |
University of Washington
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| Street address |
3720 15th Ave NE
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| City |
Seattle |
| ZIP/Postal code |
98105 |
| Country |
USA |
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| Platforms (2) |
| GPL20301 |
Illumina HiSeq 4000 (Homo sapiens) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (175)
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| Relations |
| BioProject |
PRJNA484801 |
| SRA |
SRP156496 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE118189_ATAC_counts.txt.gz |
111.3 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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