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Series GSE118165 Query DataSets for GSE118165
Status Public on Sep 05, 2018
Title RNA-seq data
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The immune system depends on a balanced interplay among a variety of specialized cell types transitioning between resting and stimulated states. While epigenome mapping efforts have focused on resting ex vivo immune cells, efforts to characterize stimulation-induced chromatin changes of diverse cell types has been limited. Thus, we collected ATAC-seq and RNA-seq data from immune cell types under resting and stimulated conditions from blood of healthy individuals, and cell types from fetal thymus samples.
Overall design 166 RNA-seq samples of 25 blood cell types from 8 healthy donors.

* NOTE: The raw data of some Samples were updated on Jan 30, 2020. *
Contributor(s) Calderon D, Nguyen ML, Mezger A
Citation(s) 31570894
Submission date Aug 06, 2018
Last update date Jan 30, 2020
Contact name Diego Calderon
Organization name University of Washington
Street address 3720 15th Ave NE
City Seattle
ZIP/Postal code 98105
Country USA
Platforms (2)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (166)
GSM3319743 1001-Bulk_B-U
GSM3319744 1001-Bulk_B-S
GSM3319745 1001-Mem_B-U
BioProject PRJNA484735
SRA SRP156452

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE118165_RNA_gene_abundance.txt.gz 15.3 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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