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| Status |
Public on Jan 09, 2020 |
| Title |
Chromatin accessiblity of influenza-specific memory CD8 T cells in the lung airways, lung parenchyma, and spleen |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
To examine differences in chromatin accessibility of resident memory CD8 T cells in the lung, influenza nucleoprotein-specific CD8 T cells from the airways , lung parenchyma, and spleen were FACS sorted and DNA isolated for ATAC-seq.
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| Overall design |
C57Bl/6 mice were infected with influenza x31 and rested for 35 days to establish T cell memory. Five minutes prior to euthanasia mice were injected with anti-CD45.2-PE to discriminate between tissue resident and circulating cells, and cells were isolated from the airways by bronchoalveolar lavage, from the lung parechyma by enzymatic digestion, and from the spleen by mechanical disruption. Cells were sorted on CD8+ CD44Hi FluNP 366-374 Db tetramer+ populations, and cells from the airways and parenchyma were further sorted on intravital label negative (i.e. tissue resident) cells.
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| Contributor(s) |
Scharer CD, Kohlmeier JE |
| Citation(s) |
31953534 |
| |
| Submission date |
Aug 03, 2018 |
| Last update date |
Apr 27, 2021 |
| Contact name |
Chris Scharer |
| E-mail(s) |
cdschar@emory.edu
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| Organization name |
Emory University
|
| Department |
Microbiology and Immunology
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| Lab |
Chris Scharer
|
| Street address |
1510 Clifton Rd, Suite 3086A
|
| City |
Atlanta |
| State/province |
GA |
| ZIP/Postal code |
30322 |
| Country |
USA |
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| Platforms (1) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
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| Samples (13)
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| This SubSeries is part of SuperSeries: |
| GSE118112 |
The lung microenvironment results in unique gene expression and epigenomic programs in airway and parenchyma resident memory CD8 T cells |
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| Relations |
| BioProject |
PRJNA484422 |
| SRA |
SRP156326 |
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