|
| Status |
Public on Dec 18, 2008 |
| Title |
Annotating Low Abundance and Transient RNAs in Yeast using Tiling Microarrays and Ultra High-throughput Sequencing |
| Organism |
Saccharomyces cerevisiae |
| Experiment type |
Expression profiling by high throughput sequencing
Expression profiling by genome tiling array
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Contributor(s) |
Lee A, Hansen KD, Bullard J, Dudoit S, Sherlock G |
| Citation(s) |
19096707 |
| |
| Submission date |
Jun 16, 2008 |
| Last update date |
May 15, 2019 |
| Contact name |
Gavin Sherlock |
| E-mail(s) |
sherlock@genome.stanford.edu
|
| Phone |
650 498 6012
|
| Fax |
650 724 3701
|
| URL |
http://genetics.stanford.edu/~sherlock/
|
| Organization name |
Stanford University
|
| Department |
Genetics
|
| Street address |
300 Pasteur Drive
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platforms (3) |
| GPL7249 |
[Sc03b_MF] Affymetrix GeneChip S. cerevisiae Tiling 1.0F Array |
| GPL7250 |
[Sc03b_MR] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array |
| GPL9134 |
Illumina Genome Analyzer (Saccharomyces cerevisiae) |
|
| Samples (24)
|
| GSM298515 |
Isogenic WT Salt Shock 30min rep1 (Crick strand; polyA RNA) |
| GSM298516 |
Isogenic WT Salt Shock 30min rep1 (Watson strand; polyA RNA) |
| GSM298517 |
XRLP (xrn1 rrp6 lsm1 pat1) Mutant Salt Shock 30min rep1 (Crick strand; polyA RNA) |
| GSM298518 |
XRLP (xrn1 rrp6 lsm1 pat1) Mutant Salt Shock 30min rep1 (Watson strand; polyA RNA) |
| GSM298519 |
Isogenic WT Salt Shock 30min rep1 (Crick strand; Total RNA) |
| GSM298520 |
Isogenic WT Salt Shock 30min rep1 (Watson strand; Total RNA) |
| GSM298521 |
XRLP (xrn1 rrp6 lsm1 pat1) Mutant Salt Shock 30min rep1 (Crick strand; Total RNA) |
| GSM298522 |
XRLP (xrn1 rrp6 lsm1 pat1) Mutant Salt Shock 30min rep1 (Watson strand; Total RNA) |
| GSM298523 |
Isogenic wild-type Rep 1 |
| GSM298524 |
Isogenic wild-type Rep 2 |
| GSM298525 |
Isogenic wild-type Rep 3 |
| GSM298526 |
Isogenic wild-type Rep 4 |
| GSM298527 |
rrp6 lsm1 pat1 Rep 1 |
| GSM298528 |
rrp6 lsm1 pat1 Rep 2 |
| GSM298529 |
rrp6 lsm1 pat1 Rep 3 |
| GSM298530 |
rrp6 lsm1 pat1 Rep 4 |
| GSM298531 |
ski2 ski8 rrp6 Rep 1 |
| GSM298532 |
ski2 ski8 rrp6 Rep 2 |
| GSM298533 |
ski2 ski8 rrp6 Rep 3 |
| GSM298534 |
ski2 ski8 rrp6 Rep 4 |
| GSM298535 |
xrn1 rrp6 lsm1 pat1 Rep 1 |
| GSM298536 |
xrn1 rrp6 lsm1 pat1 Rep 2 |
| GSM298537 |
xrn1 rrp6 lsm1 pat1 Rep 3 |
| GSM298538 |
xrn1 rrp6 lsm1 pat1 Rep 4 |
|
| This SuperSeries is composed of the following SubSeries: |
| GSE11800 |
Annotating Low Abundance and Transient RNAs in Yeast using Tiling Microarrays |
| GSE11801 |
Annotating Low Abundance and Transient RNAs in Yeast using Ultra High-throughput Sequencing |
|
| Relations |
| BioProject |
PRJNA105889 |
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